Array 1 1263-1925 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000027.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1263 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 1340 47 100.0 30 ............................................... CCATCGACAGTAGTCATAAATTGTAAGTCA 1417 47 100.0 30 ............................................... CCAAAGACGCCAGGTATTCCTTTACCTTTT 1494 47 100.0 30 ............................................... CCCTACCGTTGCAATAGCTACAATCATGTC 1571 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 1648 47 100.0 30 ............................................... ACCAGTCAAAGATGAACCACTGATAGAAGC 1725 47 100.0 30 ............................................... AGTAGTCATCAATTGAAGATCAGGGCCGGT 1802 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 1879 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TCCAGGACGAAAATAACAAGGCTTCTGCTTCTAAAAGCCTTGTTATTTGGAGACAAAAGACTTGATTTAACAGGGGGTTAAATCAAGTAATAGGAAGAGAAGAAAAGAAAGGAAGAAAAGAATTGAAGATGAATACAATAGAGAGACAAAGGAGTGTTTACTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : ATGCTGCTGACTATGGAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 850950-850339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000021.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 850949 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 850886 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 850821 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 850755 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 850692 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 850629 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 850564 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCAG 850500 29 100.0 37 ............................. GTCCTAAACGAAGGTCAACAAACCAACTTTCATCGTT 850434 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 850368 29 93.1 0 .........................G.C. | A [850344] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.3 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTGATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 661-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000037.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 660 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 583 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 507 47 100.0 30 ............................................... CTGGGCGGACAGAATGGATAGGTAGGAGAG 430 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 353 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 277 47 100.0 30 ............................................... AGGAGATGTAGGGGAACAAAGAACCATTCA 200 47 100.0 29 ............................................... TAGGTTTCAGGTTGAGCCAAAGAGAATGT 124 47 100.0 30 ............................................... ATGCTGCTGACTATGGAGCATACACCAGTC 47 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 299-1421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000038.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 299 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 376 47 100.0 30 ............................................... CCATCGACAGTAGTCATAAATTGTAAGTCA 453 47 100.0 30 ............................................... CCAAAGACGCCAGGTATTCCTTTACCTTTT 530 47 100.0 30 ............................................... CCCTACCGTTGCAATAGCTACAATCATGTC 607 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 684 47 100.0 30 ............................................... ACCAGTCAAAGATGAACCACTGATAGAAGC 761 47 100.0 30 ............................................... AGTAGTCATCAATTGAAGATCAGGGCCGGT 838 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 915 47 100.0 30 ............................................... ATGCTGCTGACTATGGAGCATACACCAGTC 992 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 1069 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 1145 47 100.0 30 ............................................... AGGAGATGTAGGGGAACAAAGAACCATTCA 1222 47 100.0 29 ............................................... TAGGTTTCAGGTTGAGCCAAAGAGAATGT 1298 47 100.0 30 ............................................... ATGCTGCTGACTATGGAGCATACACCAGTC 1375 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : ATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 23-2443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000029.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 ............................................... AGGAGATGTAGGGGAACAAAGAACCATTCA 100 47 100.0 29 ............................................... TAGGTTTCAGGTTGAGCCAAAGAGAATGT 176 47 100.0 30 ............................................... ATGCTGCTGACTATGGAGCATACACCAGTC 253 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 330 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 406 47 100.0 30 ............................................... AGGAGATGTAGGGGAACAAAGAACCATTCA 483 47 100.0 29 ............................................... TAGGTTTCAGGTTGAGCCAAAGAGAATGT 559 47 100.0 30 ............................................... ATGCTGCTGACTATGGAGCATACACCAGTC 636 47 100.0 30 ............................................... CAAACAGTCTGAGAATGTGCTGAAAGTTGA 713 47 100.0 29 ............................................... ACTTCTGCAAAAAACACTTCTCCCTCTTT 789 47 100.0 30 ............................................... AGGCAACGCCATTTCCTGAATCAAAGCAAA 866 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAGTAAGTTAA 942 47 100.0 29 ............................................... TTACCAATTTGATTAACAACACCGCCGGC 1018 47 100.0 29 ............................................... AAATGAGAAATCTATTATTAAGGCTGTGA 1094 47 100.0 30 ............................................... CTGGTAAAGTGGCGAAAGCACTTTGCAATG 1171 47 100.0 29 ............................................... ACGAATACGCCTCAGTCAAATCAGGCTGG 1247 47 100.0 30 ............................................... TTGCTTTGTCCGTTCATTGAGGATCAATTT 1324 47 100.0 29 ............................................... TCAGCAAATGCAATACACCGCAATTCCTC 1400 47 100.0 30 ............................................... GTAAATTCTGCATTGATTTATTCCCGGGTA 1477 47 100.0 30 ............................................... GTGCATCTTCAAAAACTGTGACAATTTGAT 1554 47 100.0 30 ............................................... AACACGGTCAATATTAACCGCATCACAAAG 1631 47 100.0 30 ............................................... CACCTCTTTTAAATCTTCTTTCTCTATCTT 1708 47 100.0 30 ............................................... AATAACCTCTGCATCTGCGTAGGGTCATTA 1785 47 100.0 30 ............................................... TATACCACGAAGAAAAGCGTTATCGCAATA 1862 47 100.0 30 ............................................... CGTAAAGGCGTACACCTTCGTAGACGTTTG 1939 47 100.0 29 ............................................... AATAGTAGTGCTCAATCTACGTCCAGCCA 2015 47 100.0 29 ............................................... ACGCTTTTAGAGCGTACAAACTTCTTCGA 2091 47 100.0 30 ............................................... AATGAAATATTGAACAAAGAACCAACGCGG 2168 47 100.0 30 ............................................... ATGATCAAAAAGAAAGTCACCAACAGGGTT 2245 47 100.0 29 ............................................... ATCTATTTTAAAGAAGGTGGAGTTAAAAC 2321 47 100.0 29 ............................................... AACTATTAATATACGATCTCAGCTGCATA 2397 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCGTTTGGAATCTGCGGTTATG # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 299-1421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000046.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 299 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 376 47 100.0 30 ............................................... CCATCGACAGTAGTCATAAATTGTAAGTCA 453 47 100.0 30 ............................................... CCAAAGACGCCAGGTATTCCTTTACCTTTT 530 47 100.0 30 ............................................... CCCTACCGTTGCAATAGCTACAATCATGTC 607 47 100.0 30 ............................................... TATGCTGTCCTGCTGTACGTGCGGCAATCT 684 47 100.0 30 ............................................... ACCAGTCAAAGATGAACCACTGATAGAAGC 761 47 100.0 30 ............................................... AGTAGTCATCAATTGAAGATCAGGGCCGGT 838 47 100.0 30 ............................................... CACCAGCCTCAGAACCAAGAGAACCAACGT 915 47 100.0 30 ............................................... ATGCTGCTGACTATGGAGCATACACCAGTC 992 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 1069 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 1145 47 100.0 30 ............................................... CTGGGCGGACAGAATGGATAGGTAGGAGAG 1222 47 100.0 30 ............................................... TATGTTCCGGCTGTGTCCGGCAATAGACAA 1299 47 100.0 29 ............................................... GTTGTTATTCGTTTGGAATCTGCGGTTAT 1375 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 15 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : ATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 156634-156779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGED01000007.1 Bacteroides fragilis str. 1009-4-F #10 gbf10094F10.contig.6, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 156634 24 100.0 37 ........................ AACAAAAATACTAAGTATTTGTTTGATAAGCAAGGAA 156695 24 100.0 37 ........................ GCTTTTTGTGGCTTGAGTTATGTACCTTCATCATGAA 156756 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 ATTCCCAATATATTGTGAATTTGA # Left flank : CGTGTCGGTATGTGCTGTAGCTAATAAAATACCAAAATCATCTTTTTCATCAATCTGCAATAATCTTGCCTGAACGATGCGGTTGTGCCCTTCTGACAGCATGTTGGCAAAAAAAGGAAATAGATAATGGGAAGTATATTCCTGTTGTTGTTTTGTCAATGTCAGGCTTATGGAGGGCTTTGATGGATCATTGAAATATTCGTCATCATAGCGAAATTTATATTCGTTAGAAGATAATTCCGTAATAATGCCTACCCGTTCTTTATTCAAGTATACGACTCCTTGTCTCATAGATATCCCTCCTTATTTTTAATTTTCAGAGAAAGTTCTAATCCTAATACCTCCAATATGGCATAGAGCTTTTGAAAATTAATATTTATTTCTCCATTTTCAATTTTTGTTATAGTATTGATACTGATTTGTGCTAAATCGGCAAGTGTTTGCTGATTTATACCCAACATTTTTCTTCGTTGGCGAATCTGTATTCCAATTTGTTTCAT # Right flank : ATTACGGCTATTTGTACTTTTGATTTTAGAATGACAGAGATTTCTTTTTGTTTGTAGAGTGTTTCTCAATTAACATTGTTAACGCCATTTCTCCGTTATTTTATTCTTGTGTGCAAATAACAAGCCTTTTGCATTGAAAACACTTGCTATTTGCATTTAAAGAACAAGCTTTAACGTAGCGTTAAAACAAAGCTTTGGACGAGAGAAATCTTGTGCTTTAAAAACACTGTGTTTTAGTTCGTTAAGCACACTTTTTACTTCTTTGTTTCGCTGAATCCCTTTCTGGTCAAAAGCCTGTATATTTGCTTTTTTGTCAACTACAAATAGGGGACTGACACTCTCTGCTACCTTCTTTTCGTCTTGTTTAGCGCCGCTATCAGGTATCTTCCTTTGGCTCCGATGTCGCTCCAGCAAGTGTTGGCAATCAGTTTCCATACCGTCGTTCCCTTCCTCCCATAGTCCGACAGCCTGAGTATGGAGTTTACTTCCCCGGTGTCGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCAATATATTGTGAATTTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //