Array 1 19300-19450 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAX01000017.1 Lactobacillus helveticus strain LBGT 162 seq17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19300 29 100.0 32 ............................. AATGAGCTAGGCTATGATTTTAAAACGACTCA 19361 29 100.0 32 ............................. TATTCTGTTAATGGGTGAAATCGTATCAATGC 19422 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : TGCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGGGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTGATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCTACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTGGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAGAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TATTTTGTTGGTAATGTTCCAAGTGGTACCCTTTTCGAGCTTCGTTGTAAGGAACATTCAATGGAACCAACAATTCCCAATGGAGCTTTGGCATTAATTAGGCAACAGCCCGATGTGGAAGACGATGAGATAGCAGCGGTTTTAATTGACGGCGAAGCTACTTTAAAGCGTATTCAGCATGATGGAAAGCATGTGATCTTGATACCAGATAATAAAGATTACAACGCCATTGTTTTAGACGAGGAGCACCCAGGAAAGGTGTTAGGCAAGTTAATTAGATATACTGTTGATTTTTAAGGGGGAATAATTATGGCAACAATTTGCAGTTTTTGTGGTAATAAAATTGGTTTTTGGAGTCAACAAATTTCGTTTAAAGATGGAAAGATGGGCGAAAAATGTTTAATTAAATATGGAATGGGCACTAAATGGAATTTCAAACCCGGTGCCAGAGAATATGCTAAAGAACATACTGTTCAAGAATTTAAAGATCTAATTGCTAG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 75838-74219 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAX01000003.1 Lactobacillus helveticus strain LBGT 162 seq3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 75837 30 100.0 37 .............................. CGGGTCTTTTTGGCTCAAACAACTTTTATACCTCAAA 75770 30 100.0 35 .............................. GAATTAGCTGTTGTTGGTGAAGAAGGCATTGAAAG 75705 30 100.0 36 .............................. ATAGTCAATCGCAGTCAATGACTATGCAACAAACTC 75639 30 100.0 37 .............................. TGCTAAAATGGTTCGGTCATGGCAAAAGATCACGCAA 75572 30 100.0 36 .............................. CTATGCAAGGCAAGCTTGAAAGCTTTTTACAAGAAA 75506 30 100.0 36 .............................. AAGAAAGAAGAGCCCAATATGGCGGTGGTACAGAGC 75440 30 100.0 35 .............................. TTCGATGATGCAATTAAAGTGGACATGACAGTTTA 75375 30 100.0 36 .............................. TTAATATTTGTTTGTATGCTGATAATTCACCCTCAA 75309 30 100.0 36 .............................. TTTTACAGATAGGGTCAATCTAACATGGAATGATTC 75243 30 100.0 37 .............................. TTAGACCGACTAGGTAGTAATGTCGGTATTACTAGAA 75176 30 100.0 36 .............................. AAATAAATCCAATCTTTAATCATCATTATGTGATTC 75110 30 100.0 37 .............................. CCAGTCACTTCTAGGAATATGAGCTTGCTTCATCCAG 75043 30 100.0 37 .............................. TTATTTCTAGCTAAGAAACTAATAGTATAAGTGCCTG 74976 30 100.0 36 .............................. ATCTATCCTAGTGAAACTATTGTTGGTACGGTAATT 74910 30 100.0 37 .............................. ATTGCTACACGCTGTCCATGCACATCTCTTAAAACAA 74843 30 100.0 35 .............................. CTAAAAGAAGCACCTACTTTGCATCAGGTGCTTTT 74778 30 100.0 36 .............................. AAATAAAACCAATCTTTAATTGTCATGTTGATTTTC 74712 30 100.0 36 .............................. TAGATACTTGCAAAATTAACACCGTTGACTCTTCCT 74646 30 100.0 37 .............................. TTCACAAAAGTTTCTACAGGTGTGGCGTTATAGCTAG 74579 30 100.0 35 .............................. CAGACTGATAGTCGGCTACTAAAAAACTGTGGCTA 74514 30 100.0 36 .............................. TCACAAAGTGACTTCAAGCCTTGTGGCTGTAGAGCT 74448 30 100.0 36 .............................. GAAACTACTGAGTTGCCATCGCCAGGCCCCCAATCA 74382 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAA 74314 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 74248 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 98.0 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTCGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCTTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGACCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 80954-80332 **** Predicted by CRISPRDetect 2.4 *** >NZ_SKAX01000003.1 Lactobacillus helveticus strain LBGT 162 seq3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 80953 30 100.0 36 .............................. TAGGACTGACGTAGCCTGTACCCTCGGTCACCTTCA 80887 30 100.0 37 .............................. CTCTTTGTCTTGATTGTGCCCGCATTAGCTCGCATGA 80820 30 100.0 35 .............................. AAATTGCTGAAAGTCAAGCTAAGCAATTGCAAGCA 80755 30 100.0 36 .............................. ACAATAGACAAGAGTATGAAGAAACTTTATACAATT 80689 30 100.0 35 .............................. TATTATCTGCCGTTTCCATACGTGGCACCAGAACA 80624 30 100.0 36 .............................. TAACCAACCTGATAAACCATTGTATCTGGATCATAC 80558 30 100.0 35 .............................. AATTCTATTAGAGTTATCAAGTAGACTAAAGCAAC 80493 30 100.0 35 .............................. ACCCAACCATCAATTACACAAGCTTAGTCATTCAA 80428 30 100.0 37 .............................. ACAAAAGAAATGTATAAGTGGCTATCAAACTTCTTTG 80361 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 36 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : CGCTCTCTAATAGGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGACCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAGTAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTACGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAAAGTGGCACCATGAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //