Array 1 3716804-3715553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021448.1 Ralstonia solanacearum strain SEPPX05 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3716803 29 100.0 32 ............................. TTCAGCGTGGCGAAGCTGTCCGGCCTGGTGGA 3716742 29 100.0 32 ............................. GTCACGCAATATGGCGCGATCTCGCAGGTCCA 3716681 29 100.0 32 ............................. TTGTCGATCGGCAATCTTGAGCGGGTCGGTTG 3716620 29 100.0 32 ............................. CACCGCCAGCCTGTTGTCGATCCCCCCGCTAC 3716559 29 100.0 32 ............................. GACCAGCTTCAGCAGGTTGAAGACCTTACAGC 3716498 29 100.0 32 ............................. CGAGATTTTCAAAAAGCGTGGACACAGAATTA 3716437 29 100.0 32 ............................. TGCTGATCCAGATCGCGATTCACGTATTCCGT 3716376 29 100.0 32 ............................. CGCACGAGTCTGTGATGAACGCGCGCTCGAAG 3716315 29 100.0 32 ............................. CTCAGTTTGGGCTTCCCGTCAGGGCCGTCATA 3716254 29 100.0 32 ............................. GTAGTATTCCGTAACAGTTTGCATGTCAGTCC 3716193 29 100.0 32 ............................. AGCGGCTGGCGCTCGAGGCCACGCCACAGGAC 3716132 29 100.0 32 ............................. CCCATGCACAATATGGTGATAATCCAATTCCG 3716071 29 100.0 32 ............................. TATGGATTCTCGTTCGGCGCCATGCCGGTCGA 3716010 29 100.0 32 ............................. TACGGGCTCAACCAGTTGGCCATGCAGGAAAC 3715949 29 100.0 32 ............................. GAATCTCCGGGGCTTAGCTCGGAGAGGAAGCC 3715888 29 100.0 32 ............................. TTCGCCAACGCAGCCGTGTTCGGCCAGGCGGA 3715827 29 100.0 32 ............................. AGGGAAGGCCCAAAAACACCGGGTGCACCGCT 3715766 29 100.0 32 ............................. CGCTGGCCGAACTGCCTCAGGTGGTGGTCGAG 3715705 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 3715643 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 3715582 29 86.2 0 ............C..........ACC... | T [3715567] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.5 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATTCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : CCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCACCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTGAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3726396-3726181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021448.1 Ralstonia solanacearum strain SEPPX05 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3726395 29 100.0 32 ............................. ATAACAACCCTGGGGGGACCGTCGCCACCACA 3726334 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 3726273 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 3726212 29 86.2 0 ............CA..........T...A | TC,A [3726184,3726188] ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTCGACTGCGTGAGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGACGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : ACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAACCAAAATAAATACCCGCAAGACTGCTACGATCCCCAGTTCGGGAGCAGGCACAGATCGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGCGTCGCAATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //