Array 1 121-1244 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSXU01000018.1 Zoogloea sp. 1C4 XMAS_Iso1_NODE_18_length_81565_cov_92.0997, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 121 37 100.0 38 ..................................... GCGTAATCGCGCTCCCGGTTGCGCTCCCGAATTCGACT A,G [123,126] 198 37 100.0 36 ..................................... AAGCTGCTTACCGTTGCGGGCCGCGATCTGCGCCGC 271 37 100.0 35 ..................................... ACGTCGGCGTACGCCCCGGCGTAAGTCGTGTACTT 343 37 100.0 35 ..................................... CCGTGGATGGTGGATATTTACGCTCCGGCGACTGA 415 37 100.0 36 ..................................... CGCTCGGGCTTGGGTGCTTATGTCGATCTGACGAAG 488 37 100.0 37 ..................................... AGAATTAACTAGAAAGCTATTGTCCGAAAAAAATAAG 562 37 100.0 34 ..................................... CGAGCTCAGCCGGGAAGCTGACCTTGATTTCCTT 633 37 100.0 34 ..................................... ACCTGACATGGTTACTCCCGGTTACCTAAGATGG 704 37 100.0 33 ..................................... GAGGCGAATTCATGGCTTCGTGAAACGTCGGAA 774 37 100.0 34 ..................................... CGGTGCCCGGCGGCAAGGCGCTGGATTTTGTGAT 845 37 100.0 35 ..................................... CTGAGCCCTCCCCTCTACCACCCCGCCCGCCGGTG 917 37 100.0 36 ..................................... CTGAACGTCAGCAATCTCGTTGAACTGATCGGGGAA 990 37 100.0 34 ..................................... CAGCCACTCCAGCCACCCAGCCAGGGCCACCGCA 1061 37 100.0 37 ..................................... ACCACGCTCCGCGCAACCCGTGCAGCCCGGGTCGGTG 1135 37 100.0 36 ..................................... CCGTCGAAGCCATGCAGCTCGACGCCCTGCGCGCAG 1208 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 100.0 35 GCTTCGTCCGTCAGCAATGACGGACGTGGGTTGAAAC # Left flank : ATCCAGCAGCGATTGGGGATCGAGTGTTTGAGTTCATACTGTCTATTTATCAATGACTTAACGGTATGAATTTTACCGAGAGTGGCGCGGGTTCACAAGGGGGTTGGCGTTAAGTTGGGAG # Right flank : CTAGTGGTACAGATCGATTGGAGCGAGCCCGCCCGAAACCCTTACCCAGCGCGGCTTTCAGGTCATTTCCACGTTTCTCCGCGGCCCCCTCCTCCGCTCCGGCAATCATTCCACGACGTCATGCGCCCATTGCTCGACGCCGAGCAGCCGCTGCACGACATCGGGCAACCATTGCCGGGCATCAGGCGATCGTTGCCCGATCTCGGGTAATCCTTGCTCGACGTCGGTCTGAGGCTGCCGGATGTCGAGCAACGCTTGCCCGACGTCGAGCCACCGTTCCCCGACGTCGAGCGACCTTTGCCCGATGTCGGGTAGCCATTGCCCGACATCGGAGAATCCTTGCCCGACGTCGGTCGATGACTGCCGGATGTCGGGCAACCATCGCAGGATGTCCTGCAGCAGGTGCACGACGTCGTGCAGCGATTGCAGGACATCGGGCAGAGGTCGGTCGACGTCGGTGAGCCACCGCAATCCGTCGCTCAAGGCATGGCGGGTGACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCGTCCGTCAGCAATGACGGACGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATTCGTCCGTTAGCAATAACGGACGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.00,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 324249-330150 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSXU01000004.1 Zoogloea sp. 1C4 XMAS_Iso1_NODE_4_length_330327_cov_89.8232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 324249 37 100.0 37 ..................................... CGCCTTAACCCGTCCTTCGGCTGGAAGGGTTCCGCCT 324323 37 100.0 34 ..................................... CGGTCGATGCCGTGTGAGATTCCCGTACAGTGCC 324394 37 100.0 36 ..................................... GCCGAACTCAAGGCCGCCCACGAGAAGCTCCTCACC 324467 37 100.0 37 ..................................... GCCAAGAGCGGCGAGGCCTACCTCGTCGGCCTCGCCG 324541 37 100.0 35 ..................................... AGGCCACTGGCAGTTCGGACCGCGCCGTCGAGCGT 324613 37 100.0 35 ..................................... AATGCCTTCCTCGCGGCCGTTGCCGAGGTCAATGG 324685 37 100.0 36 ..................................... GTCCCCATCATCCAATGGGCCGAGCAGAACCAGCCC 324758 37 100.0 36 ..................................... ACAAACCAATACTTCGCCGCCGCACTCCGCGGCTGC 324831 37 100.0 36 ..................................... ACCGCCCAGGTCCTGGAACACGGCGACGCCACCCAA 324904 37 100.0 34 ..................................... TCAAAGGTCATCTCCACATAGACGAGCGACGGGT 324975 37 100.0 34 ..................................... ACTCAGATGTACTGCGACCTTGAGCGCGATCTGC 325046 37 100.0 34 ..................................... AGCATGCTCCCTCCAGTAGGACATTTATATTAAT 325117 37 100.0 35 ..................................... AAGTTTAGATACTTTATCTTGCTCTGCTTTAAGTG 325189 37 100.0 34 ..................................... ATTTCTAAACATATCAAGATAATCTTGATACATT 325260 37 100.0 38 ..................................... GTGTTATTGGTGTTATTGACCTCAAAAAGCCTTTAAAA 325335 37 100.0 35 ..................................... TTTGTAGTACCCGATTTTGTTGCAAAAAATCGGGA 325407 37 100.0 36 ..................................... TTTCGGACACGATCAACGTCGGAAATACGCTATGGG 325480 37 100.0 38 ..................................... ATCCACTCCCACGCCGAGCCGGCCGGCGCTTCCACCGG 325555 37 100.0 36 ..................................... GCAGACGACGGTATCTGCCGCCGACGTGGTGACGTT 325628 37 100.0 35 ..................................... CGGTTGCCGGGCCTTCGTCGTCGCGGTGGGGTGCC 325700 37 100.0 34 ..................................... TCGGTTTAAAGTCTGGGATGTTCTTGTAATGAAA 325771 37 100.0 37 ..................................... ATCCAACAGAGCACGAAGAGGGCAAAAACAAATAAAG 325845 37 100.0 34 ..................................... ATAACGGGCGGCAGGTGGAGCACCGATAGGCCGT 325916 37 100.0 35 ..................................... CATCGCGCTCTCGGCAATCTCCGAAAGACTAGCCG 325988 37 100.0 36 ..................................... AATGTCGAGGCCGCGTATATTCGTACAGACTCGCCT 326061 37 100.0 34 ..................................... GTTGGTGAGGTCGAAGTATTCACCGGCAGCGCCA 326132 37 100.0 35 ..................................... CTGCAGGACCGCATCGGCCATGGCCGTGCGGCGCG 326204 37 100.0 34 ..................................... AGGCACTTAGACACATACCGCGCGCCGCCAGTCG 326275 37 100.0 38 ..................................... AGCCCCAGCTCGCGCGCCAGCAGCAACAGCCGATCATT 326350 37 100.0 35 ..................................... TTCCGTGATGAGTTCGCGGTATCCGGTGATCTTGC 326422 37 100.0 36 ..................................... GAGCGACGACGAGCCGTCGCCCAGCACCCGGCGGTT 326495 37 100.0 37 ..................................... TGTTGATCGCTGCCGGCAGTGCCCCCGGCGGCTTGGG 326569 37 100.0 37 ..................................... TTGGCCATGCCGAACGGCCTCCTTATTAAAAGTCTAG 326643 37 100.0 36 ..................................... ATCCGCAACTACAACGTCGACGGGAGCGGCGTACCG 326716 37 100.0 36 ..................................... GATCCCGAGGTGGAGCTGAAACGCGAGCGCTTGCGG 326789 37 100.0 35 ..................................... CAATTTTCATCTACGAGGAAACTGCCAAGGGCCGG 326861 37 100.0 37 ..................................... CCTTGAGCGGGACGTATCGAAGGTACCGCTGCCCTGG 326935 37 100.0 34 ..................................... AAACGTACGGCTTTGGCCCCCCGACGCGGGGTGA 327006 37 100.0 36 ..................................... AAATCTATCTCGAGCTGACCAAAGACGACGACTCGA 327079 37 100.0 36 ..................................... TCGATCGAGCAGTACGAGTGGCTCAACAGCGAACGC 327152 37 100.0 34 ..................................... GTGTCGGGGCTGCCCGGCAGGGCGTAGCCCTCCA 327223 37 100.0 35 ..................................... AATGGCAGTATCGGATTACGGTAGTGCATTCTTAG 327295 37 100.0 36 ..................................... CCTTGCCCACCTGGACGATCAGCGCGTTGATCTCAT 327368 37 100.0 35 ..................................... GTGCACAGCCAGCGTGACCAACGCATCTCAATGGC 327440 37 100.0 34 ..................................... CGGCGGAACCCGCAAACGCATGCCGGAGGACCTC 327511 37 100.0 36 ..................................... TCCTGCGGCTTGGGAATGAGGTGCGCCATCTCGGGA 327584 37 100.0 34 ..................................... TGTAGCCGGTGATGATGGGGTAGCGCGGGTCGCC 327655 37 100.0 34 ..................................... CTCGCCACCGACAGCACCGGCGCCACCGTCACCG 327726 37 100.0 37 ..................................... TCGACGACACCGTACTGGGGAACCCATTGCGTCCGCG 327800 37 100.0 36 ..................................... TTGCTGAACGTGGCGATAACGTTTGCCGTCCATGCG 327873 37 100.0 36 ..................................... ATCCCCCCGCGCAAATACGCCGCCAGCCTGCGCGGA 327946 37 100.0 41 ..................................... GACGTTTTGCCTCGGAAACGGCGCGCTGAAGTGCGACGGGT 328024 37 100.0 34 ..................................... GGCTCGCCACCCAGTGGCGCACCGGCATCAACGG 328095 37 100.0 36 ..................................... CGCGCTGGCGCACGTCGTGACGAAGGCCTATCAGCA 328168 37 100.0 35 ..................................... AGCAGGGCACCCGTCATGGTTCCGCCCGCCGCAGG 328240 37 100.0 36 ..................................... CCGACAGGTAGGCAAGCGCCTGCGTCTGATCGTCAT 328313 37 100.0 35 ..................................... TTGCTGGCCACGCCATTGATGACGTCCTTGGCGGC 328385 37 100.0 35 ..................................... CATGATGATGGCGGCAGCCCCCGGCAGTTCGTCAG 328457 37 100.0 34 ..................................... TCCGTGGTGTGGCGCGGCCAGACCTACACCATGG 328528 37 100.0 35 ..................................... TCCTATGAAATCTGCCCTCCGAATGCGAGCTGAGG 328600 37 100.0 34 ..................................... TCTCGGCAGTAGCTGAAGACATCCATCGCGGACC 328671 37 100.0 34 ..................................... TGCTGCGCGGTGATGGTTTCCGTCAGATTCACCG 328742 37 100.0 35 ..................................... CGTGGAGCCTGTACAGCGTCGTTGCGAAAAGACCC 328814 37 100.0 34 ..................................... AGGATGCCAACGGGCTGATCTGGATTAGCATCGA 328885 37 100.0 34 ..................................... TGCTCGATCCCAAGCCCACGTTCATCGCCCCCGT 328956 37 100.0 34 ..................................... GATCTGCCCGTGTGCTTCACCTCCGACACCTTCT 329027 37 100.0 36 ..................................... GGTAATGACGTTGGTGCCAAGGGCGGCGGCGACCTC 329100 37 100.0 36 ..................................... CCTCCTGTATCACCTGATCAAAGTCGATAGACGCCT 329173 37 100.0 37 ..................................... GTAACGCAGCTGCTCAGACCGCGCCTGCGCCAGCAGG 329247 37 100.0 37 ..................................... AGGTAAGCCGGGTCAGTCCAAGCCCATGAAACAGAGT 329321 37 100.0 35 ..................................... ATTTGCCGCTTCTGCGAAGATGTTTGGAATGGTCA 329393 37 100.0 34 ..................................... GACTGGTCTGGTTGCGATCACACCGACCGGCTAT 329464 37 100.0 35 ..................................... ACGCCGTGAGAGATAAGGTCGATATTGACGATCTG 329536 37 100.0 35 ..................................... TTAGTGGTCAGTGTGTCGCCGTCTTTTGCTGCAAA 329608 37 100.0 36 ..................................... TTTGCGGAACATAACATCCAGCTCGACGCCTTCCGG 329681 37 100.0 34 ..................................... AGGAAGGAATACTGACCGGCAACACGTTCAGCAG 329752 37 100.0 34 ..................................... ACGCATGATTAGCAACCTCGAAAAGCTACATGCG 329823 37 100.0 37 ..................................... CTTGATTACAACACTTATGACCGATACACCCCTGTAG 329897 37 100.0 36 ..................................... GACTCGTTCAAGACCTATCCGGGCAATCAGACCAAT 329970 37 100.0 34 ..................................... AGGGGCACGCGATTCGCCTGACTCGCGGCATGAA 330041 37 100.0 36 ..................................... AGCGACGGAACCGCCATAGGTCCGGACGGCACCTAT 330114 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 82 37 100.0 35 GCTTCGTCCGTCAGCAATGACGGACGTGGGTTGAAAC # Left flank : CCGCCAATCATGCTCGTGATCGTCTGCTACGACGTAAATACCGAAACCAGCGCTGGCCGCCGCCGCTTGCGCCGAGTCGCCAAGGTGTGCGAAAGCACCGGCCAACGCGTCCAGAAGTCCGTGTTCGAATGCCAGGTCAACCTGATGCAGCTTGAAACCCTGGAGCGCGAGCTGCTGGCAGAAATCAATGAAGCCGAAGATAACCTCCGCCTCTATCGGCTTCCGGAGAGCCGAGGCTCCGAAGTAAGGGAATACGGCAAATTCCGCTCTACCGATTTCAACGGCCCGCTGGTATTGTGAGCCGCGTTGCTCACAAAACAAAAGCGCGAACCCCAAGTGACCGGCTTAACCCCGGCCATTTCGCGCACCACGCAAATCGTTGATTCATTTGAGAACTTCCTTTCAGGCAATGACCCACCCCATCCGCTATCAAGCTTCGTCTGCAGGTTCGCGCAACGCGGATCATTTTGGACAGCGGATCAGACATTTGCAGATGAAGC # Right flank : CGACGCGTATAGGCAGTAAGCCGCCCCGGCCAACGTGCTTCGTCCGTCAGCAATGCTCCCAACTTAAGCCCCCTTATATGCCAAATGCTGGTGCGGCTTGACGCGTCGTGGCCTGGGGTAACTTCGATCAGGTTGGATGTGGCAGCGGGCACACGCGATGGCGTCAAGCACGGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCGTCCGTCAGCAATGACGGACGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATTCGTCCGTTAGCAATAACGGACGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.00,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //