Array 1 376455-375957 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025932.1 Porphyromonas gingivalis strain W83 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 376454 36 100.0 30 .................................... AAGACGTGTCGGCGGACGAGCTAATCGACT 376388 36 100.0 30 .................................... AAGACGGAGTACAGGGACGTTGTCCGCATC 376322 36 100.0 30 .................................... GGTAGCACATTCCTTGAACAAACCTTTATA 376256 36 100.0 30 .................................... TGGAGGTAAGGTCAAGAACCCGACCCTTGA 376190 36 100.0 30 .................................... AGAATTTGGTTATATAAGATATAGTCTTAT 376124 36 100.0 30 .................................... AGATCGAAACGGGTATGCCTTACGTCTATG 376058 36 100.0 30 .................................... TGGAGGCAAGATGTTTTACTTCGACAAGAA 375992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCCTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAAGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCTCTCCCCGGTACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATTTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACAGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTATGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGGCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 1171472-1171969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025932.1 Porphyromonas gingivalis strain W83 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1171472 36 100.0 30 .................................... TCCCATTTTTGAGCCAAATCTGATACAAAT 1171538 36 100.0 30 .................................... TACAACATCTTTAGTAATTTCTTTAGTAAT 1171604 36 100.0 30 .................................... GTTGTCCCAAGCCTGAACGGTAGCGTTGTC 1171670 36 100.0 30 .................................... AAACGCATCGTTATAAGTTTTTGTGATTGC 1171736 36 100.0 30 .................................... GTTGTCCCAAGCCTGAACGGTAGCGTTGTC 1171802 36 100.0 30 .................................... AAACGCATCGTTATAAGTTTTTGTGATTGC 1171868 36 100.0 30 .................................... ACCTTTTCTTCCACATCCTCAGGAGCAGGA 1171934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGAGGTTGTGCTATTGATGGGGAAGTATTCCTAAATTAGCGATTGCTAAAGTGATGGAAGATGGATAGGAGGATCGTGTTCGGAGGAGAGGGCTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCTGTAAATCTCGATTCTTTTAACTCATATAATTGTCTGTTCCTATCATACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGGCGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGTCGGGAGCATATCGCCCGACTCTATGATCGCTACGGCAGTGAAGCCGATGTTTCTATTGTGGAGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 2068904-2068359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025932.1 Porphyromonas gingivalis strain W83 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2068903 37 100.0 36 ..................................... TCACTGACCATGAGGTAAAGTACCCATTCTATCGGA 2068830 37 100.0 37 ..................................... TGTTTCGCCATGACTTAATAAGTTTTACAATTTTTGA 2068756 37 100.0 38 ..................................... TTGTGAGTATAGGGCTTTTCTACTCCTTCTTCCTCAAT 2068681 37 100.0 34 ..................................... GACAGCGGGGTTTTTGCTGAACCAACTCCCTGCA 2068610 37 100.0 36 ..................................... TTTGATAAGTTTGGTATCCAATTGGAGAGTCTAATT 2068537 37 100.0 34 ..................................... AGATTAAGAACATTTTATAAGTTCAATTAATTTT 2068466 37 97.3 34 ....................T................ ACAAATGCTTGTTTTTCTGCTTTAGTAATACGTT 2068395 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 99.7 36 CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACGGAAAATCAAGAAATCTCATTGTATATCAATGAGATATAATCAACTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGTA # Right flank : ATTGATTACCGAGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCCCGGGCTTCTGTGCTCTATGGCGTGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACTTCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCCACGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGAGGGGACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 2102526-2104591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025932.1 Porphyromonas gingivalis strain W83 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2102526 30 96.7 35 A............................. CTTCGATTGGCCCGTAAGGGAATTCGCAGCCAAAG 2102591 30 93.3 35 CG............................ GATCCGATTCGTCTGCGTCGTCGAGCATAAAGGCG 2102656 30 100.0 35 .............................. AAAAACGACAGCGTGAAGTCGCCGGAGAGGCTGAT 2102721 30 100.0 34 .............................. AATAAAGCAGATTGGGAAATCCTATATGTACTTT 2102785 30 100.0 37 .............................. TAGGTTAGTAAAATAGAGGTGTTCGCCGTAATATACT 2102852 30 100.0 37 .............................. CTGCAAACTCGTACCTATCCACTGCAGGCTTGGCTTC 2102919 30 100.0 37 .............................. AGCTATAACCCTCGATGAGTACTACGAGGGAAATGGC 2102986 30 100.0 36 .............................. GAAGTAGTTCTCGCTCGCTACCGAGAACGCTTCTTC 2103052 30 100.0 34 .............................. TTTTCAGTCGGTAGCGAAAACTACTTTTTATTTC 2103116 30 100.0 35 .............................. AACGCATTTTATGTGCGCCAAGATAATTGGGGCAT 2103181 30 100.0 36 .............................. TTACGGCAAAAGGGTTTAGATACCTAATGGAAAATC 2103247 30 100.0 35 .............................. AATAAAGCAGATTGGGAAAATCCTATATGTACTTT 2103312 30 100.0 37 .............................. TAGGTTAGTAAAATAGAGGTGTTCGCCGTAATATACT 2103379 30 100.0 37 .............................. CTGCAAACTCGTACCTATCCACTGCAGGCTTGGCTTC 2103446 30 100.0 37 .............................. AGCTATAACCCTCGATGAGTACTACGAGGGAAATGGC 2103513 30 100.0 36 .............................. GAAGTAGTTCTCGCTCGCTACCGAGAACGCTTCTTC 2103579 30 100.0 34 .............................. TTTTCAGTCGGTAGCGAAAACTACTTTTTATTTC 2103643 30 100.0 35 .............................. AACGCATTTTATGTGCGCCAAGATAATTGGGGCAT 2103708 30 100.0 37 .............................. TTACGGCAAAAGGGTTTAGATACCTAATGGAAAAATC 2103775 30 100.0 35 .............................. CATTTTTACAATGGATGCCGAAACCGACAGTCTAA 2103840 30 100.0 36 .............................. AAGAAAGAAGAAAGAATAAGTAGAAATAAAGATGAT 2103906 30 100.0 37 .............................. TAATGTTACACAATGGTATACTGATGATGGTAAACTT 2103973 30 100.0 37 .............................. TTACGAATATCTAACGATGATACTATAGTGCAGTTTT 2104040 30 100.0 37 .............................. TAAATCAATCAGACAGTATCAAATGAAGTGCGGATAC 2104107 30 100.0 35 .............................. CTATAAAAGAAATTCCAAGAGAGCATGATTCTGAG 2104172 30 100.0 34 .............................. TTAGCAGACGAAGACGATTTTTCAATGTAGTAAA 2104236 30 100.0 36 .............................. ACAAGATGGTAAAATGTTTGCTAATCTTAAAACTTT 2104302 30 100.0 36 .............................. GATTCTCTATATGTTCAGTTCAATACAATGCTGAAA 2104368 30 100.0 36 .............................. AGCGTATTTCGGTCTATCTCGTAGCGTTCGAAAAGC 2104434 30 100.0 35 .............................. ATGATAGAGGAGATAGGACTCGCGCTCACCGATAC 2104499 30 100.0 33 .............................. CTCCGGGTTGGGCAGCACGGCTTTGAGGAATTG 2104562 30 96.7 0 .G............................ | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 99.6 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGGTCGGGAGATACCTCTTCCATAGCCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAAAGCACAATCACTGAGGTTGTACCATGTCTCCAAAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCCTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTTAATACTCAAATATACAAAATAACTCCCTACTATACAATCAATTAACAAACAAAATATACGCCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCAAAATTCAGAACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //