Array 1 8887-9031 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIG01000114.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8887 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 8948 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9009 23 79.3 0 .......................------ | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8748-7255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIG01000185.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8747 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8686 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8625 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8564 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8503 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8442 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8381 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8320 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8259 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8198 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8137 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8076 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8015 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7954 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7893 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7832 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7770 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7709 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7648 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7587 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7526 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7465 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7343 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7282 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-2022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIG01000074.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 119 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 180 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 241 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 302 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 363 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 424 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 486 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 547 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 608 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 669 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 730 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 791 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 852 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 913 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 974 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1035 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1096 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1157 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1218 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1279 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1341 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1444 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1505 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1566 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1627 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1688 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1749 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1810 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1871 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1932 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1993 29 96.6 0 A............................ | A [2019] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //