Array 1 1053-3017 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUD01000027.1 Salmonella enterica isolate STY138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1053 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1114 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1175 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1236 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1297 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1358 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1419 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1481 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1542 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1603 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1664 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1725 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1786 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1847 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1908 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1969 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2030 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2091 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2152 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2213 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2274 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2336 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2439 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2500 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2561 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2622 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2683 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2744 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2805 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2866 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2927 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2988 29 96.6 0 A............................ | A [3014] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5325-6634 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUD01000057.1 Salmonella enterica isolate STY138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5325 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5386 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5447 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5508 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5569 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5630 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5691 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5752 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5813 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5874 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 5935 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 5996 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6057 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6119 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6180 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6241 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6302 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6363 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6424 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6485 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6546 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6607 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //