Array 1 25260-25484 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211035.1 Sulfurihydrogenibium subterraneum DSM 15120 Q385DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 25260 29 100.0 36 ............................. TTGATTTTCGTCTTGATATCAACGGAACTACCGTTA 25325 29 100.0 37 ............................. GCCTATACAACAGAAACAGGAACGCAAGCAGTGGCGA 25391 29 100.0 36 ............................. ATCGTTAAACTTCACTTTTGTATCCTAAAAACTTTT 25456 29 89.7 0 ..................A.....G..G. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 97.4 37 GTTTTGTCTGAACTATGTGGGATATAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTAT # Right flank : GTGGAGAGGCAAATGGATAAAGAGCAAAGCCAAAACTCTAATATTGATATTAAGGATATTATAGAAGATTACGACTACCTACTTTCATATCCAAACTCCAGATATCCACAAGTTTTTGTATGTAGTGGCTGGATGTTTTATGACCTGAGAGACCAGATACACGAGCTTGGGCTTGATGACCACCCAGAAGTTAAGAAATTAGATAAACAGCTTTTAAAGAAAGTTATTGAATGGGTAGCTCCCGACGATTACAAAGCTAACAAAAAATATCCTGAGATGTGGTGGCATCATCTTGACGAGATAAAAAAAGGAACATACCCTAAAGAGAAGCTTCCTGATTATCTAAGAGATATTCTTTGAAATGCTAACGAGAAATATGCTATATTCTTTATATGGAGATTATAGTTTTATCTCTACTTTTAGGATTCTTTTTAGGTGGGATTGTAATTATTTTCATTCCTGCGTTCTTTGTCTTGTATGTTATTTTTGCTTTTGTTTAT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTGAACTATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 67369-67528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUV01000012.1 Sulfurihydrogenibium subterraneum DSM 15120 Q385DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 67369 29 100.0 37 ............................. CAACTTGATTATACCAATCGTCAGCTGACATTCCAGG 67435 29 100.0 36 ............................. TTTAGTTTAGGTAGAGGTTGAGAGAGTAATCTCTGC 67500 29 89.7 0 ......................GT....T | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 96.6 37 GTTTTGTCTGAACTATGTGGGATATAAAG # Left flank : GGCTCAGTTTATAGAAAAGTTAAAAAATTACGAAGAAGAGTTATTTTTAGAGCAGAAAACTATAACAGTGAATTTAATAGAAAGTATATTAAACCCCAAGGGAGCTGTTTATAAAAAGTTGGATAATGGGAGTTTTTAAAATTTTTGTTGCATTTTTTGCAAAAGTTTTATATAATGTTTTTAGTAGTTAATAGGTAGAATTTAAATACCTTGACAACTGAATAGGTTTAATCCCACTTAAGTTTTTGATAATTAGCTAAAATTAGCTTATTAATAACGATTATCATTAAGTTTTGCATCGTGATAACAGAAAATATATTATTGTAATAATCAAATAGTGATAAGGGTGAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGGTTCGATGCAATTAACCTCAATTTGCGAGCGGTTAACGAAAATAAAAACTACCCGCAAACCAGCGTCAGTGCTTGATTATTTAAATTTTTTTATTTTTAAAAATTAACGG # Right flank : TATCTTTTAAAATTTTTGTGGGAATTTTAATTTTAATTGTCGTAGATTTCTTTTTGTGGTGGTTGGTGATACCAATTGTGATTATTCTAATGATTTTTTAACTCATTTTGATTATTCCTTCTTTTATCCTATCATTGTTAAGCTCTATTAAATCTAACTTTCACGAAATTGATAAAAAAAATAACTAATGCTATAATCTTTTTATGTTAAAAGCATACATAGATAGAATCAACGTTTTTGGGTTTAAGTCTTACGGAGATAAACATCTTTCTATCCCGTTAGGAGAAGGGTTTACTGCCATAGTTGGTCCAAATGGGTCTGGTAAAAGTAATCTTGGAGATGCTATCGTTTTCTGTCTTGGAATAGCCTCTGCAAAAGCAATGAGAGCCATAAAACTAACAGACCTAATTTTTTCATCAAAAGGAAAAACAGCTCCTTATGCAGAGGTTGAGATAGTATTTAAAAACAACGGTGCATTCCCTCTAAATACAGAAGAAGTA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTGAACTATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 50127-48897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUV01000008.1 Sulfurihydrogenibium subterraneum DSM 15120 Q385DRAFT_scaffold00001.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 50126 30 100.0 42 .............................. ATATACTAAGTAGTGCGAAATTAGATACATCTATTGAAACAA 50054 30 100.0 36 .............................. GATAATCTTGATAAGTATAGAACAAATAAAATTTAC 49988 30 100.0 37 .............................. TATGTAAACAAAGATAAACCAATAGTTATTATTGATG 49921 30 100.0 35 .............................. ATAGCTCAAATGTTTGGAGCTGAATATTCTGACGA 49856 30 100.0 36 .............................. TATAGACAACGATGGACTTCAAAAAGATGAAAGCGA 49790 30 100.0 36 .............................. TTTCTGTGGCACTTTCAATAGAGCTCCCTTGAAAGA 49724 30 100.0 37 .............................. CGGAATAACAGTTATCTATGTCTTCGACTTCTATTTT 49657 30 100.0 37 .............................. AATATTCTAAAGTTTCCTTTGAAGCTGGGTCTGCATA 49590 30 100.0 36 .............................. TTGACGACAGTTTAAAAGTAGAGTATGAGAAAACTT 49524 30 100.0 36 .............................. CTACCCAATTGGTGTTTTGTGTGTCAACTGCAATCC 49458 30 100.0 37 .............................. AATTGTTATCAATTGTCTTATCAAGGAATGTAGCTAG 49391 30 100.0 36 .............................. TTGACGACAGTTTAAAAGTAGAGTATGAGAAAACTT 49325 30 100.0 36 .............................. TTACTACTCTGTAGCTCAAGCTGAAAAAGAAAGCCA 49259 30 100.0 38 .............................. ATGATTGTAGAAGAATGCTAATTGAGACAATAGATTTA 49191 30 100.0 36 .............................. GAAAACGAAAAAGAACACTACTACGCAGAACAGGCA 49125 30 100.0 38 .............................. TTCCTGCGTTTGAAGAAGCTATTTACATAGAAAGTCTC 49057 30 100.0 35 .............................. TGTATGCCCTAATTCTTTTAAATGCATTTGTGAAT 48992 30 100.0 36 .............................. TCAAAGTAGAAAGTGAGTATTTTATAGAGATGAACT 48926 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ========================================== ================== 19 30 99.8 37 GTTTTTAGCGTGCCTATGAGGAATTGAAAC # Left flank : GTTTACGATGCTAATGAAAAGAGAGTTAGTAAGTTCCATAAAATTTGTAAAAAATATCTGACTCACGTTCAAAACAGTGTATTTGAAGGGGAGATAACAGAGGCAAATTACAGAATACTTATAGATGAGTTAAAGTCCATTATGAATAAAGATGAAGACTCTGTATTGGTTTATAAATTTAGAACTAAAAAATATTACGAAAGAGATGAATTTGGTATTAGCAAGCCTTCATCAGAAGATATTTTCTTTTAAACCGAATTGCAGTCGTCGTCCTATCGAAATTGGCAGTTTTTGAGTCTCAATTAGAAATAGCTAATTGAGATTAATCAATCTAAGTAATTGAAAAATAATAACTGTCGATCTCCAGGGATTTTTGCAGGATTGGAGGTCGACTGGAATTTTTACATTTCTGTTGCATTTTTTAAAAAAGTGTAGTATACTATCTAATAGTTGATAATAAACGATTTTAACCTTGACAACCGAATAAGGTTAAAGAAGGG # Right flank : ATTTTTTATTAAATCTTTAAAAAAATTTGCTATAATATCTCAAAACAAAATAAAAAACAGGATAAAAAGGTGAGGATCAAGATACAGCTGATTTCAGATAGAGATTACATCACTCTTCCGATACATCACAATCATATAGTTCAAAGTATGCTTTATAATAATCTCCCAAAAGAAATAGCTAAATTCCTTCACGATATAGGATTTTTTTATCATAAAAGACAGTTTAAACTTTTTACATTTTCAAAAATACAATCTCAACATTACACTCTCATAAAAGAAAACAATAAAACAAAAAGCATAAAATACAAAACTCCAATCTCTATATACATATCTTCAGCTATAGGCGATTTTACAAAAAACTGGGGAGAAACTTTTTTAAAAAATGAAGAAGTTATGTTAGATAAAAATACACTTTACCTTGAAAGTATAGAAGTCCTTCCAAACCATGATTTAAAAGAAGAATTCACAATAAAAACCCTATCTCCAATAACAGCCTACAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 158120-158677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHUV01000009.1 Sulfurihydrogenibium subterraneum DSM 15120 Q385DRAFT_scaffold00002.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 158120 29 100.0 38 ............................. GAAAATCAAAAAAATAGCTGAAGAAGAGCTACAAGCTG 158187 29 100.0 37 ............................. TTGAAGCTGCTTTGTTAACAACTTCTGCTTTTATTAC 158253 29 100.0 37 ............................. GAACATTTTTTTATTATTTTCTTTTTTATTTTTTCTA 158319 29 100.0 37 ............................. ACGAGTGCTGTTATTATAGCACCCGCATAAGGAAAAA 158385 29 100.0 38 ............................. TTTCTAACATGACATCATCAATCTCAAAATATTTTTTG 158452 29 100.0 38 ............................. TCATCGTATTGAGAGGTAAATTTTATCACTGGGACTAA 158519 29 100.0 36 ............................. TAATTCTCCCTGCCACGAATGACTGCACTGATACCT 158584 29 100.0 36 ............................. GTTTTTCTTCTGGGTTGTAGTATTTCCTGTATTCCT 158649 29 86.2 0 .........................GTTT | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.5 37 GTTTTGTCTGAACTATGTGGGATAGAAAG # Left flank : AGTATTTTAAGATAGTTTCTCCAAGCATAATAACTCCTTGTGGTGAAAATTTTTTAATATTATACTTGAATTTTTTATAAGATTGGAGTATATTATAAATCTGCTTACGGAGGAGTGGCTGAGTGGACGAAAGCGGGTGATTTGAAATCACTTGAGGGTTGACAGCCCTCCGGGGGTTCGAATCCCTCCTCCTCCGCTTAACATTTACCTTGACAACCGAATAGGTTTTAATCCCACTTAAGTTTTTGATAATCTGGTAAAATTAACTTATTAATAACAATTATTATTAAGTTTTGCATCGTGATAACAGAAAATATATTATTGTAATAATCAAGTAGTGATAAGGGTGAAAGTGGGAATATAATAGAAAATATATTTGCATTATGTGAGGTTTGATGCAATTAACCTCAATTTGTGAGCGGTTAACGAAAATAAAAACTGCCAGCAAACCAGTATCATTACTTGATTATTTAAAATTTTTTATTTTTAAAAATTAACGG # Right flank : TAATTACAATTTTTAAACAGAGAGCTTATAAAAACGATTATGATATCGTTTATAGTTTCTAAAAACTTATTGACAAATCATATCGAAAGATTATATAATTATGTATATGAAAGCAAAAGAATATTAAAAGTTTTAAGAATAAGTAGAATAACATAATTAATGAAAGAGGCAAAGCCTCTAAGGACGGTAAGATTAACGCTTAACTTAATTTGAAAAGTAACCTGCGAGTCTCTATTAGAGATAGCAGGTAGAAGGCCATTACGGGTACACTGCAAGATAGCTTTGTTTACCAGTTAGTATCTGTAAGTGTACCTTGAATGATGAAAAATAGAGTGTATAAGTTTTACACTATCAAGGAAGCTGTAAGAAATCTCTAGCTAATTTTAAATAAGTTTAAACCCAAAACAATGATTATCATTACAATAATAGAAGCTATAAGTAAGATTTTTAGTTTTCGATTTTCTGCTTTCACTTCATTTAATTTTTTTCTTACAGGCGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTGAACTATGTGGGATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //