Array 1 174192-173744 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWV01000007.1 Pasteurella multocida strain HND20 Contig007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 174191 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 174131 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 174071 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 174011 28 100.0 32 ............................ TTAGCCACCATCTCGGCAATCTCGAGCCGGCG 173951 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 173891 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 173831 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 173771 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.2 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 101921-100272 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWV01000006.1 Pasteurella multocida strain HND20 Contig006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 101920 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 101860 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 101800 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 101740 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 101680 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 101620 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 101560 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 101500 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 101440 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 101380 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 101320 28 100.0 32 ............................ AGAACTTACTGAATTTGATATTAGAAAATCTT 101260 28 100.0 32 ............................ ATTTTTCACAACGCATCTTTTCCATTGCGATG 101200 28 100.0 33 ............................ GCACCACGACGGCACGCCACACTGGCACTTGTT 101139 28 100.0 32 ............................ CACTGTTTTTCTTTTGAGTTTGCCACCCTCAA 101079 28 100.0 32 ............................ TACTCCTTTGATAGTGTTTAAATGCCGTTTAA 101019 28 100.0 32 ............................ TGCCGCATTTGTTGGAATAATTCCCATCAGCT 100959 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 100899 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 100839 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 100779 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 100719 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 100659 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 100599 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 100539 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 100479 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 100419 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 100359 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 100299 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : GACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //