Array 1 442-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIJ01000020.1 Salmonella enterica subsp. enterica serovar Tennessee strain FCC0047 contig0019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 441 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 380 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 319 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 258 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 197 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 136 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 75 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GCCTGCCGTCGCCGTCGCCATATCCGGCGCCCCGCCCCTATTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6242-8285 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIJ01000005.1 Salmonella enterica subsp. enterica serovar Tennessee strain FCC0047 contig0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6242 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 6303 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 6364 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 6425 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 6486 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 6547 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 6608 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 6669 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 6730 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 6791 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 6852 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 6913 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 6974 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 7035 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 7096 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 7157 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 7218 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 7279 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 7340 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 7401 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 7462 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 7523 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 7584 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 7645 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 7706 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 7767 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 7828 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 7889 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 7950 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 8011 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 8072 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 8133 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 8195 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 8256 29 96.6 0 ............T................ | A [8283] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11038-10400 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIJ01000008.1 Salmonella enterica subsp. enterica serovar Tennessee strain FCC0047 contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11037 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 10976 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 10915 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 10854 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 10793 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 10732 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 10671 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 10610 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 10549 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 10488 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 10427 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGCCACGACTAACCGGTACTAATCCTGAGTTCA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //