Array 1 64380-65187 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBUS01000041.1 Vibrio fujianensis strain FJ201301 FJ201301-04.seq, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64380 28 100.0 32 ............................ TTTTAGATTTTGTAATTGAGCTTTAGAAAAAC 64440 28 100.0 32 ............................ TCAAGTAAGTAGTTAAGTCTTGCTCAATAAGA 64500 28 100.0 32 ............................ GCGAGCGCGGCTCGTGGGGGTCGGGGTGAAAG 64560 28 100.0 32 ............................ GCGAGCGCGGCTCGTGGGGGTCGGGGTGAAAG 64620 28 100.0 32 ............................ TAGAGCGCGATTAAGCAGGCTACTTTCAACCC 64680 28 100.0 32 ............................ AACAGCTTGGCTTGTTCTGCTAGCTCTTTGTT 64740 28 100.0 32 ............................ TCAATCGAGGGGTTTTTGTTATGGACGCTCTT 64800 28 100.0 32 ............................ GAAAAGTTTATTTAAAATGTTTCGAGTTCAAC 64860 28 100.0 32 ............................ AAGAGCCTGAAACAATGATTTAGGACGTGTTC 64920 28 100.0 32 ............................ GCAAACTCAAAACCAACGACACAACCGGAACC 64980 28 100.0 32 ............................ ATGCTTGGCTTGGTTAACAACAATAGATAATA 65040 28 100.0 32 ............................ AGTTAAGGTCGAGGCTTCTCACTATGGGTAAA 65100 28 100.0 32 ............................ TGAGCTACTCTTGTGAAGTTAACGCCAGCACA 65160 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAAGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAAGTGCAATATCGAGTAATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTTAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAGGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTCTTTGAGTTTGGTGAAATTCAGCCACTGCCAGTATCCGGAAAATTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATATTTAAATACAAATAGTTACAGCAGGTGATTTAAAATAGGGTAAAAATGACTTTTTTACTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : AGCGAGTGATCGGCTCTTCTTATGTTACCGTTCGTTCATTGTGTTAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAATAGCTTAAAAAGTTCGCGCTTTATCGCGTCGTTCTAAGATAAACTGCAACATTCATTCATCAATCAAGGAGAAAATTTGATGAAAGCGATTATCTTGATATGTATCACCATAAGTTCTTTTTTAACCTTACCCGCTTATGCCGTTGAATTTTGGCATTCCAATACGGTTTGGGCCGGTCAAGGACAATGTTCGGCTGTCTTTTCATTTGATAGTGAAATGAATGAAATAATCGATCTTCAGCTTTCAGTTTCTGCTTTTAATCAGGTCGGTGAAGAAGTTGCATCGGGGGTTATTGAAATTGCACACTTTGGCCAATCATCAGCTGATCGTTATATTGACGCATACTTAGAGAGCGAGGCTTTTTGTGATGAACAACTAACCATCTTAGTTAAGGATGCTCAAGCCATCGTAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 684327-682651 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBUS01000054.1 Vibrio fujianensis strain FJ201301 FJ201301-01.seq, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 684326 32 100.0 33 ................................ CAGCCTGGGGACGAATATGCGAATAAGCACCAG 684261 32 100.0 33 ................................ AGGGCCAGAGCGAAACAACCACGGCCACGCTTT 684196 32 100.0 35 ................................ AGGGCCAGAGCGAAACAACCACGGCCACGCTTTTA 684129 32 100.0 34 ................................ GTTGCATCTTTATCAGCGATAACGCGCTTCGCTT 684063 32 100.0 34 ................................ CATTGAAAACACATCAGCTTCGTCTAGATCTTCA 683997 32 100.0 36 ................................ TAGGTTATAGCGATGATGCAGAGCAAGCGCTAACAT 683929 32 100.0 34 ................................ GGATCTAGCTTTAGTGTTCAAGAAGATATTCACT 683863 32 100.0 34 ................................ AGACGATGAGCAGACAATAATAAAACGCTCATGG 683797 32 100.0 34 ................................ TGTCCACCGTATCCGGCTGAGCACATCGTGTTCC 683731 32 100.0 35 ................................ AGATTACCCACGTTGATCAGGTGGGTGAAAGTGAC 683664 32 100.0 33 ................................ TTATCAAAGCTGATACTGTAGTTGAGGACTTAC 683599 32 100.0 33 ................................ AGCGCTGAATTCTTAGGGATGGCAAGATCTCGC 683534 32 100.0 34 ................................ TTGGTAGCAATAAGAATTTTATGGTTGAAGTAGA 683468 32 100.0 34 ................................ TGTAATCGCTGCAATGTACATCGCGTCTGCAATG 683402 32 100.0 33 ................................ CCCTACTCTTAATGCTGTTATTCTTTTTGTTGC 683337 32 100.0 34 ................................ CCAATCTTTAACTGAGCCGTACGTCACATCGCAA 683271 32 100.0 34 ................................ CGCTTGAATCTTTTTTGCTTTATAAATCCACAGC 683205 32 100.0 34 ................................ ATTGAAAATACAGATGAATGAAACTTCAGGCAAC 683139 32 100.0 33 ................................ AGCATATAAACAGCATCAGAAACACGTACCATC 683074 32 100.0 33 ................................ AGCATATAAACAGCATCAGAAACACGTACCATC 683009 32 100.0 33 ................................ TCGCAACCGCTATCAGTCAAGCTGCTTTAAGTG 682944 32 100.0 34 ................................ ACATTTGACAGCTCACGAATCCCGTACTCTAAGT 682878 32 100.0 34 ................................ AACGGATCGGAATGGATGACTCCGGGGTTGCGTT 682812 32 100.0 33 ................................ ATTTTTGTATCCTTGTCTTGTTGCTAAAGTTTC 682747 32 100.0 33 ................................ TTCTCTTTTATTCTCAGTTCTTCCAAAACCTAC 682682 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTTTTGGTCACCTACGATGTATCCTTTGCCAGTGATGATGGGCAAAAACGCCTCAGGCAGTTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGCCTTGGGTTCTCAGTAAAATACTGGGGATCTAGCGATGGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTCACTCAAAATAGTTTTCTTCTACCCAACAAAGTTAGCGGCAAACTATAATCTGTGCTAATTTATACCTGCCTTTCACAATAGGCA # Right flank : CCGCTCCGCGGGGGTAACTGGAATAATGGTTCGGGGCTCGCCTCCTACAGGTGTAAGATTTGATCGATGACGTGGCGGTTTTCCTCATGGCAATTTTGTGATGAGCGATTTTTTCGTCAATATAGTCACTTAAATCATGTTTTTATCGACTATATTAGAATTGGTTGTTATCCTGTAACGCTTCACATGGCGGTTAATATCATTAGGTGTGGGGCGATGGGATCACTGTTGGAAGTGAAGCAACTGAGTACGTATAGCCAACAAGGTTGGCAAGCATTAGTTACTGCGTCGTTTGAGGTTGATAAAAATGAATGTATCGCAGTTATTGGGCCGAACGGCAGTGGTAAATCGAGCTTACTTAAGTCGATTACTGGTGAATATTTGGCTGTTCAGGGTGAGTTACGTATTGATGGCCATAAACTGAGCGATTTATCTCTCCAACAAAAATCCAAATTAATTGCTGTAGTCGCACAAAATGATTACGTCGATCCTCGTTTAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 774-86 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBUS01000049.1 Vibrio fujianensis strain FJ201301 FJ201301-49.seq, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 773 28 100.0 32 ............................ ACTATCATCCTTAATGACTAAATTGTGATTAT 713 28 100.0 32 ............................ GTCCAGTCTTTCGGGTAACGCTCAGCTTCATC 653 28 100.0 32 ............................ ACCGGGTTGAGTCGGAGTAAATGACACAACAG 593 28 100.0 32 ............................ ACTCTCAATACGCATCAGCTTTGCGTGTTGCT 533 28 100.0 32 ............................ GTAGTAAGTTTCATTGGGGACGTCTTTTTCAA 473 28 100.0 32 ............................ TTGATCATGCTTTCAGTTGGGAATGATTTCCT 413 28 100.0 32 ............................ AATATTGCCGGGCAATAATGCTAGACCAGCAG 353 28 100.0 32 ............................ AGTTAATGCTTTAATCAGCGCTTCGTCTTTGG 293 28 100.0 32 ............................ CGACTTCCGGCGAGCTGGTTTTTTGATTTGAG 233 28 100.0 32 ............................ ATACTACACGTACTGATGATGATGGGTTTCAT 173 28 100.0 32 ............................ TTTTTCAAGCGGCAATGAAAATTCAACAGGGA 113 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGTTTGGTTGAGTATTTGAGGTTACGGCTGGTTAATTTGAGCGTAGTGGCTTGCGTTGCCTGCCCCTTAATGCGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTCTAAGTCATTGATTTATATTAATAATAAATCGAGAAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAAGTTACTGCTAAAGTTTCAT # Right flank : ATATTGTGTCAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAACGATCAATCAAAATTGATCCACCCTTTTACTCAGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //