Array 1 1151791-1149842 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT960790.1 Latilactobacillus sakei strain J54 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1151790 36 97.2 30 ............................G....... TCAGCCAATGCGTCATAATCAGCTTGCGAG 1151724 36 97.2 30 ............................G....... TATCCAAGCGATAGTGTACTATTACTTATA 1151658 36 97.2 30 ............................G....... TTGGCCAAGCATTGAAGCCGTTAAAAGCTA 1151592 36 97.2 29 ............................G....... TGGGGTCTAATCCATCGTAAGCTTCTTTA 1151527 36 97.2 30 ............................G....... GTGCCAATAAGGATCTTGCACGCAAAAGGA 1151461 36 97.2 30 ............................G....... ATTACACAGATCGGAGTGATGCGTGATGTA 1151395 36 97.2 30 ............................G....... TTGGTTGAGTTTTTAGAGGCTTATGAGCAC 1151329 36 97.2 30 ............................G....... ATGCTCACATGTTGGAAGAAGAACGTATAT 1151263 36 97.2 30 ............................G....... TTACGTCGACCTTTTTAGCAACTTCTTCTT 1151197 36 97.2 30 ............................G....... AGCGCAACAACAACGCTGATAAGCACGATT 1151131 36 97.2 30 ............................G....... TGTTAGACCGGTTTGGCGGGTATTATCGTA 1151065 36 97.2 30 ............................G....... TTACTTCGTTTGTAGACTATAATGAGCTTT 1150999 36 97.2 30 ............................G....... ACAAACATTTGTTTAATTGGATTGTCATAA 1150933 36 97.2 30 ............................G....... TAACAATGGCATTTTTAACAACAGATTATA 1150867 36 100.0 30 .................................... TGAATACTACGGGTAACCGTTTAAAGACGT 1150801 36 100.0 30 .................................... TGTGCTTCAACCTTGTCCAGGCGGTGCTTA 1150735 36 100.0 30 .................................... AATCTAACGTTTGACTTGGCATTACAGTAA 1150669 36 100.0 30 .................................... TGGTGTTATCGGTGTAAGTCCAAATTGTCC 1150603 36 100.0 30 .................................... ACGCGCAATAATAGACACACTTTCGCGCTA 1150537 36 100.0 30 .................................... TTTAATATCTTTGTTAAAATCTCGATAATG 1150471 36 100.0 30 .................................... TTTTATCATCCCAAATTAAACTATTCCATT 1150405 36 100.0 30 .................................... AAGGCCTATAAGTCTAGCGAACGCAACTAT 1150339 36 100.0 30 .................................... ATTAAATGGGATTTTTTAAACCGGTGAACA 1150273 36 100.0 30 .................................... ACAGAATTAATTGTTATTTTCTCACCGCTA 1150207 36 100.0 30 .................................... GTTTACAGAATAACGCTGGTTACAAGGTTA 1150141 36 100.0 30 .................................... CCTACTATCATTTAACTGGCGACGTTGGGT 1150075 36 100.0 30 .................................... TGAACAGTTTGATGGGTCAGTTAGGATGAT 1150009 36 100.0 30 .................................... TGTTCAGGATTAATCTCGCCGCCTTTCGCA 1149943 36 97.2 30 ..........................T......... ACGGTTCAAGAAGATTTTACAAAGTGGTTT 1149877 36 91.7 0 ...........................C.....G.T | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 98.3 30 GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Left flank : GCGGTTGATTTAAATCATCTTTTTCAAAATAAGTTGATCAAAAAATTTACAGCCGATCTAACGGATGAACAACGACAAAAGGTAGTTAATCTGAATAATGAATTACGAGCCACTATTTTAGAAGCCGCGTTTATGTATGAATTAGCTTTAGATATTGACCATGAGTTAGATTTGCAAAAGTTAATTAAATTTTGCAATTTAAAATTTTCGAATGATGTTCAAGATGATCCATATGGTATAATAGAAAGCATAGTACAAACTGCTATAGAGTTACAAGAAACAAGAATTATCACGTTGATCAACGTTTCGCACTATCTTAGTATCAACCAGTTTAATGAACTGGTAAGACTAGTTGCGACATTGGATGTGAAACTCTTTATCATTGAATTTTCAGAATTGGCAACGCCTGACAGGTACCAAGAATGCTGTTATTATCACATTGATAATGATTATGTTGAATGGCGTTACGAATAAAGTGAGTATTTGATGAAAAAACATCG # Right flank : CACGCTAATAATCGTAAATTCTTTTAATTTAAGTTTGGGGAGTACCTTTAAAGGGGTACTCTTTTTTATTAGATTTAATGCATATCCTTGATTGATATTTCACGATTCGACTATTGAAAAGCGTTCTCATTTAGCTTAGAATTAAGTCAGCAACAACGTGCTATAATGCGATTTTTGGAGGGTCAGTAATGTCTAAATTAGAAATTATCGATTTACACGTCGGAATTGACGGTAAAGAAATTTTAAAAGGTGTTAACTTAGAAATGAATACGGGTGAGATTCACGCCATCATGGGACCAAATGGGACCGGGAAATCAACCCTTTCAGAAACCATCATGGGTAATCCTAAATACGAAGTGCTTCAAGGTGAAATTAAATTAGACGGTCAAAATATTCTTGAAATGCCAGTTGATGAACGGGCGCGCGCTGGCTTGTTCTTAGCGATGCAATATCCATCTGAAATTCAAGGGGTTACAAACGCTGAATTTATGCGGGCTGCT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTAGTTCAAC # Alternate repeat : GTTTTAGAAGAGTATCAAATCAATGAGTGGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1937703-1937205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT960790.1 Latilactobacillus sakei strain J54 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1937702 36 91.7 30 .GCC................................ AGCGAAAACTGTGTCTCAACATTAAATGCC 1937636 36 100.0 30 .................................... TTGGCGCAACTAATACATAATTGTTAATGT 1937570 36 100.0 30 .................................... ACTAAGTCAGTTAGGGAGTAGATTTCTTTT 1937504 36 100.0 30 .................................... CCAACCTGAACGTTCGATTGACCCTGATTA 1937438 36 100.0 30 .................................... TGTCCGCTTATGGACAATCTTCATAGGTGA 1937372 36 97.2 30 .....................A.............. AACAACTGCTACTGGCACATTACCGCTTAA 1937306 36 100.0 30 .................................... TCAATTGCTTGGTAAAGATGGGAAGCTTCA 1937240 36 91.7 0 ...............................C.G.T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.6 30 ATTTCATCTTAACCGAATGTTGAAGGAAACAATAGC # Left flank : GGAATTGATAACTATATTCGTTGGTATAACAGTGATCGTATTTCACTTGTAGCGTAGCTACAGGCTATTAAATTCAATAATGTTGGGGCTTATTTAATATACTCTAAAGCGTTTTTAAAATCTGAACGGGACTAAAACTTCGGCCTCCGAAAATTAATTAAGTAATTTAAATTGAAAGTCAAATTTGTTCGTACTTTTATGTCCGGATTCTTGACATAGGAGCCAATATCAAGTTCTTCTTTTAACCGTTTATTTTCTTTAATCAAAGCACGTTCATTTGATGATAGCACTTTAGTGTTGTTAGGATCAGCTTGTTTAATCCACTTAGTGACCGTTGAAACACTGACGTTGTATTCTTTAGCCAGTGAGTTGGCCGAACGGCCAGTCTGACTTAAGCTAACAATCGATTCTTTAAATTCATTTGAATATTTAATTGCCATAATAAAAAGCTCCTTTATGATGTATTATATCGAACAGTTTGTCCGTAATTCCATCATAGG # Right flank : CAGAATCTGTCCGGTTTGTGTATTTATAATAAAGTAGAAGAAAGTCTTCCGGGAACATACTAGAAGCTTGTGTCCTTTATAAAAAGTATGATTGGGTGTTTTGTTCTACAATGGTATTATAACCTATAAGATAATGTAGCAAATGACTATATTAAGTGAGGTTTTCATCATGGGTGTTAAAATGATCGTTGTTGATATGGATGGGACTTTTTTGGACCAGAATAATCAATATAATCAGGCGCGGTTTGCGCGAGTTTTTCAGGCGTTACAAGCACGTCGAGTTAAATTTGTGGTCGCTAGTGGATCGCAATATCAACGGCTGCAAAATCAATTTGATCCGTATCGTCAGTCGTTAGATTTCATTTCTCAAAATGGAGCGATTGTGCATCATGGCAATGATTTACTGCGAGTAGATGCATTGGCTGATGATGATTTACAAGCGTTGTTAGCGTTAATTGCGAAGGGCTTTCCAGCGGGGACAATTGTGCAAAAAACAATTT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCATCTTAACCGAATGTTGAAGGAAACAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //