Array 1 41826-41618 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024803.1 Acinetobacter baumannii strain OCU Ac18 plasmid pOCUAc18-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41825 28 100.0 32 ............................ TGTGATTTCCTCAAATTGAGTTAATGAGATAG 41765 28 100.0 32 ............................ AATCTCATTATCAATCATGCTAATAATGCCCT 41705 28 100.0 32 ............................ AATGCAGACAAAGCGTTAGGTGAGCGCATTGA 41645 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCATGTAGGCAGCTTAGAAA # Left flank : GTGAAGTGTGTCTAATCAACAGGGTTTTCGGTCTCTAAGCACTTTTTAAAGGGAACATCATCGACTCAAATCTCTATTTGCAACAGTGCCCTTTATTATTATGGATAAAATCCACCATTATTTGTGTGGGCGGTCGAGCTCCGCCTGGGCGAAAAAAGCGGCTGCTTTGCGTAGAATTTCATTGGCTCGTTGCAGTTCTTTATTTTCGCGTTCAAGTTGTTTAATGCGTTCTTGGTCTGAAAGCTGCTGTACTTTGACTGGATTCTGTTGATTCAAATGCTTCTGATGCCAGGAACGTAGTGTTTCAGGAGTACAGCCAATCTTAGGAGCAATTGCTGTGATTGCAGCCCAAGTAGAAGGATAATCTTTTTCGGATTCAATCAATAATTGAACCGCTCTTTCTCTGATTTCAGGGGTATATTTTGGTTTTGTCATCGGGACATTCTCTCAAGAAAGTTGGTCTCCGACAAACCCGGTACGGTTCAGTCTGGTGATGCTGG # Right flank : AACTGTAGCAGCTTGCTACATATTTAATTTGTTTCATGGTGATGTATGCAGATCTTAATATGTAAAAGGCGAAGGGTAGATCACCAAAGATTATTGAATTGATATGCTTTTAGTCCTAATAAATTAAGCAATTTTTATCGAATGTTGGTAGAGCTTTTATAATTGATTTTAAAAATGCCCATACTATAAAAAAACAAGAGCACGAGGCTCTTGTTGTTTACTGATTGGAATTAATGGTTATAAGCACTTTCATTGTGGTCAGTTTTATCAAGCCCCACTTGTTCTTGTTCTTCATCTGCACGTAGTGGCATGACTAGACCGACGATTTTGAATAGAATCCAAGACAAGACACCCACATATAAGAAGGTAAATAGAATACTTGCAATTTGAGCAAGGACTTGAGGCACAATCGAAATACCTTCGACATTACCACCCAGTGCAGGAACACAGAAAATACCAGTTAAGATACAGCCGACAATGCCGCCTACGCCGTGTACAGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1064895-1062226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024802.1 Acinetobacter baumannii strain OCU Ac18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1064894 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 1064834 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 1064774 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 1064714 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 1064654 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 1064594 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 1064534 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 1064474 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 1064414 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 1064354 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 1064294 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 1064234 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 1064174 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 1064114 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 1064054 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 1063994 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 1063934 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 1063874 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 1063814 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 1063754 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 1063694 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 1063634 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 1063574 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 1063514 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 1063454 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 1063394 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 1063334 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 1063274 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1063214 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1063154 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1063094 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1063034 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 1062974 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 1062914 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 1062854 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 1062794 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 1062734 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 1062674 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 1062614 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 1062554 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 1062494 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 1062434 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 1062374 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 1062314 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 1062254 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 45 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GTGATTCACAGGTGCTCGGTGATTTACTTGGTCAAATACCACTTGATGAGCGAGTAGATTCTGTCTATACCGATGGAGCCTATGACACTAAATGCTGCAGACGAGTGATCTCAGATCGTCAAGCATATGCGGTGATTCCGCCAAGAAAAAATGCGAAACCGTGGAAAGATACAAAAGTTCATTCGCAAGAGAGAAATGAATTACTAAAAACAGTTAAGCGTCTAGGAAGAGCCCTTTGGAAAAAGTGGTCTGGTTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCTACTCAAGGAATTTTGACAGCCAAGTGAATGAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCATT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1070986-1065974 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024802.1 Acinetobacter baumannii strain OCU Ac18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1070985 29 100.0 31 ............................. ACAACGATGAAGTTGCTGGAATAAGTGCAAT 1070925 29 100.0 31 ............................. TAATGCGCTCTTGATATAACTTTGCGTAGTA 1070865 29 96.6 31 ............................A ACAGATACAATCTGCGGGACATTTAGCCACT 1070805 29 96.6 31 ............................A GTTGTTGATAGAGATATTGGCGGAGAGGTTC 1070745 29 100.0 31 ............................. GCTCTCTGCGCTTGTCCTCGCGAAGTGCATC 1070685 29 96.6 32 ............................C AGTTGCTTCCGCCTGATGCTGCTACCCACACC 1070624 29 96.6 31 ............................C ATTTCATGCGGCGGATCTCGATAGTCCTGAG 1070564 29 96.6 31 ............................C AAGAACTCAGCAGCTTGGGAGTCATTAAGCC 1070504 29 100.0 31 ............................. TAACCTGATCAATAGCAATTTGAAGAAGATC 1070444 29 100.0 31 ............................. ATAACAAACCAAAATTAAATAGCCGCCTAAA 1070384 29 96.6 31 ............................G ACAAAATCGGATGGTAAGAAAAAGCCAAAAC 1070324 29 96.6 31 ............................G AGTTGGTCGTGAAGAATTTGCACACATGCTC 1070264 29 100.0 31 ............................. CAGAAGACATGGCAAATGAAATTGCGACTGC 1070204 29 96.6 31 ............................A CAATCAATTCGTCATCAATATCTATACCTGC 1070144 29 96.6 31 ............................G CGAGTTGGACCGGTACCGAGAATGCCTGCAC 1070084 29 96.6 31 ............................A AAACATGAATGCCATTGATACTGCTGATCTA 1070024 29 96.6 31 ............................A CTTCAAAGCAGACACTCCTGATATGCTCAAG 1069964 29 96.6 31 ............................G ATAAATTGACTTGGGTTAAGTCTGAATTGGT 1069904 29 100.0 31 ............................. GTAGACGGTGCAAATTCTCAAAGTTCTTTTT 1069844 29 96.6 31 ............................A GAACCACCTGTAGAAGAACCAGAACCAGAAC 1069784 29 96.6 31 ............................A AAGTTTTTTGTCATTTCTGCTGTGAGCTATA 1069724 29 96.6 31 ............................A CCACCGCCAATAGGCTTATTATTGATAGCAT 1069664 29 100.0 31 ............................. GTCATACCAACCCATGTTCGTTGTGTTGACG 1069604 29 100.0 31 ............................. TAGCAGAACAAGCAGAACGTGACGCTTATTT 1069544 29 100.0 31 ............................. ATAACTATGAAATTGGTAATCAGAAGTTTGA 1069484 29 100.0 31 ............................. AGTCTCGATTGGCGTAAAACACCGATGGGAT 1069424 29 100.0 31 ............................. CTAATCATTGCTACCACCTCGATAATGACCA 1069364 29 100.0 31 ............................. AATGATCCTTACGGTGGCTGTTATAAACCGC 1069304 29 100.0 31 ............................. GAAGATGTCATCACCATGTGAGCATATGGAA 1069244 29 100.0 31 ............................. TCTCGGACCGCAGAATGCTTCGCAATAAAGC 1069184 29 100.0 31 ............................. GATCCTAGTGATCCTCCGGATGGTGATCCGC 1069124 29 96.6 31 ............................G ATTTGCCCAAAGAAATGGTTGCAAATCGGCT 1069064 29 100.0 31 ............................. ATATCGGTTTGGTTGTGATTGCTGTAGGTGC 1069004 29 96.6 32 ............................C GGCATCTGATCCACCGCCGATCACTCCGCCTG 1068943 29 96.6 31 ............................A GAAACCCCCGCCCAATATAGTGGCTTCTTCG 1068883 29 100.0 31 ............................. TGAGTATTAATATATCGAAAAGAAGCAGAAG 1068823 29 100.0 31 ............................. TTTGGAAGCTCTCTGTCTGCTTCACGCATTA 1068763 29 96.6 31 ............................C TGCGCGAATTGAGAAAGGTATTCATAAGCTG 1068703 29 96.6 31 ............................C TGTGGGTCTTTAATCGGTTCGGCTTTACCGT 1068643 29 96.6 31 ............................A GACGATTGGCGTGATACTCCGGATGGTTCAA 1068583 29 100.0 31 ............................. CGTGTAATTGAATTTATGCAGGGTTTACTAC 1068523 29 96.6 31 ............................A TAAGGAGCAGGTTGATTATTAGGTGTGGGTG 1068463 29 100.0 31 ............................. AATTCCAAATTATCCGAGCCAAAAATGTTAT 1068403 29 96.6 31 ............................A GATGGATTGCATATCAATCAGATCTATTGGT 1068343 29 100.0 31 ............................. TAAAAATGCGTGATGCAAAGCGACTTGCTGC 1068283 29 96.6 31 ............................A CCACGGTGGGTTTTCTTTTGTCTATTAAAGC 1068223 29 96.6 31 ............................A AGAAGCATTTTTGTGGCCGCACTGAGTGTTT 1068163 29 96.6 31 ............................A TTTAGCATTGCAGGCATTGATTTTTGCTTCC 1068103 29 96.6 31 ............................A CAATCGCTTTAATAATCGCGCTCGATTTAGA 1068043 29 96.6 31 ............................A TATTCCTAATGGTGGGTCACGAAACATCATT 1067983 29 100.0 31 ............................. CAAAGCGATTCACATTAAATGTATTTGTATT 1067923 29 96.6 31 ............................C GACTCTCTCAGCATCGTGTCACGCCGATGGA 1067863 29 96.6 31 ............................A TTCACAAAAAACAGGAAATTCAAGAGATATT 1067803 29 100.0 31 ............................. TTCAATCATGATATCTAGGGTCTTTTTCTCG 1067743 29 96.6 31 ............................A GGATTACCCTTCGAATCTTTAGAAACCGTTC 1067683 29 96.6 31 ............................C AAGCGAACTGCCTTAGGTCGTGTTTCGCTTA 1067623 29 100.0 31 ............................. TGCTGCGTATAAGCTACATATCGACCATTCT 1067563 29 100.0 31 ............................. TAGTTCGCATAATGCAGATTGATGTTAAAAA 1067503 29 96.6 31 ............................A TTTGTGACACCGCTAAATGTAATAAGTGACA 1067443 29 96.6 31 ............................A TATATCCTTATTGAAATGACCATGAATAGTC 1067383 29 96.6 31 ............................G CTTCGGATAAGCGAATTGATCAGAGCAAGAA 1067323 29 96.6 31 ............................A TTAATAAGATGGGGGTAAAGACATCTGATAC 1067263 29 100.0 31 ............................. GTAACTGCTAAGAGTAAGACAGTTACCAAAA 1067203 29 96.6 31 ............................A CTAAACACAGGCTTTGACGTAATCTCATAAC 1067143 29 100.0 31 ............................. ATGCAAATTTTAAATAGTTAAATTGCGAAAC 1067083 29 100.0 31 ............................. ATTAAATCAGGCTGTCAAAATGGCGCGACTT 1067023 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 1066963 29 96.6 31 ............................A GTCATCTGGTAAAGAAATTACGTATTCGAAC 1066903 29 100.0 31 ............................. TGATCTGAATATACGGTGCATAAGACGAATC 1066843 29 100.0 31 ............................. TAAGGGGTCAAACTATGAAATTAACCGATGA 1066783 29 100.0 31 ............................. CCGACTGATCCGCCTGACCAACCGCCTCCGA 1066723 29 96.6 31 ............................A TGTGCGATCATTAGCATTAGGTGCAGATTCT 1066663 29 96.6 31 ............................A CCATGTGAACATGCATGCATTGATGCAATAT 1066603 29 100.0 31 ............................. TTTTAGGCATGTGTGGCGGTGATAAAGCAAT 1066543 29 100.0 31 ............................. TGCACTAAACGCTTAGTTACAGACCAACCTT 1066483 29 100.0 31 ............................. GAGCCGTCAGTCGGTTTAAAATCAACAGCTT 1066423 29 100.0 31 ............................. AACTCTATTGTTGTTATCCCGACATCTATTA 1066363 29 100.0 31 ............................. CTATTTTTCCATTCGGCACATGCTTTTTTTA 1066303 29 96.6 31 ............................A TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 1066243 29 96.6 32 ............................A ATTACCCCAATTACTGCTACAGCACCCCCAAT 1066182 29 96.6 31 ............................A AGTCTCGGTAAACGTAGAGATAGAGATACGC 1066122 29 100.0 31 ............................. GTTAGGAGCCAAAAACTCACTTAAGATAGCC 1066062 29 96.6 31 ............................A TAGTCGCTTGCGGTACGATCTTAGCTGCACC 1066002 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 84 29 98.2 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAATCTACCGTACAACCAATTGGCCCACATACAACCGAGCTCTCATTAATCGTGGGAATATTGCCATTTGGTTTGATCCCAAAACACAATGGTATGCTCAACCAAAAAGCCAACATGGTCGAAATCAAACTTATTCCGATACAGCCATCCAATGCTGCTTAATGATTAAATCCATATTTCGTCTTTCTCTACGCATGGTCACTGGCTTTGTACAAAGCCTGATTAAACTTTGCGGATTAGATTGGACAGCGCCAGACTATACGACGCTTTGCAGAAGACAAAAACATATTGATATTGCGATTAGCTACCAAAAAAGTAGCAATGGTCTACATCTACTCGTAGATTCAACTGGTTTAAAGTTTTTGGGCGAAGGTGAATGGAAACGGAAGAAACATCAGCCTGAATATCGTCGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1076542-1077048 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024802.1 Acinetobacter baumannii strain OCU Ac18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1076542 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 1076596 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [1076601] 1076654 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [1076672] 1076721 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 1076781 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 1076841 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 1076901 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 1076961 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 1077021 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGTTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2850990-2841410 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024802.1 Acinetobacter baumannii strain OCU Ac18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2850989 30 93.3 30 ............................TG TATCAAGTAACTCTTCTGCGATCGATGGCG 2850929 30 93.3 30 ............................TG GTGAAGGTGCAGTAGAAATCGATTACGATG 2850869 30 100.0 30 .............................. TTGAATGGCATTTAGAGCAATATGGGTCAT 2850809 30 93.3 30 ............................CT CCTAACTTCTACGGTAGGACCCTCCTCACT 2850749 30 93.3 30 ............................CG CACAAGGCGGGCAGTAGGTTTACATTTGCA 2850689 30 93.3 30 ............................CT AGAGGAAAGTAAAAAATGGCACAAGAATCA 2850629 30 96.7 30 .............................G ACTGGCACCGCCTGAGCTTTGGCTTTTTCT 2850569 30 93.3 31 ............................CG GGGCGAGGAATGTGGTTACACAGGTGTTGCA 2850508 30 100.0 30 .............................. AGCGATAATCTCGAAAACAGTTGCAGTTCA 2850448 30 96.7 30 ............................T. GGGGAAAGGTCATCCCACCTAATGAAATCG 2850388 30 96.7 30 .............................T TAAGAGCGCTCCTTAATTTTAGGCATAAAA 2850328 30 96.7 31 ............................T. TATTCGCAATTGCTGTCATTTCACCCCTCCT 2850267 30 93.3 30 ............................TT TAATTCAGCAGGTATTCTAAAGTTTACTTG 2850207 30 100.0 30 .............................. GTGCGGGTTTTTCTTTATGTGACATTTAAT 2850147 30 96.7 30 .............................G AGGAACACCTTGTTCATAGCGTCTAGATCG 2850087 30 96.7 30 ............................C. CAACATCATCTCGATATTGATTTGCTTCAG 2850027 30 96.7 30 .............................T TCGAAGAAGACGAGATGCAAGCTTAAAAGA 2849967 30 93.3 30 ............................TC TAAACCTGTGGATAAATAGCGCATTACGCC 2849907 30 100.0 30 .............................. TAGCACTTAATCCCTTTAAAACTGGAAGGT 2849847 30 96.7 30 ............................T. CAAATTTTTTCAATTCTTCACCAATAATTT 2849787 30 100.0 30 .............................. GTGCGGGTTTTTCTTTATGTGACATTTAAT 2849727 30 100.0 30 .............................. TTAAGTCAGATTCTGACCCGATCAACGGAG 2849667 30 100.0 30 .............................. GATGAAATTGATAGATTATGTCTTGCAGCA 2849607 30 93.3 30 ............................TC ACTCACAAGCGGCTCATTCAAATAGCTCGA 2849547 30 93.3 30 ............................TT TTTGGGAAATCGTGGAAGAAAGCTTTAGCA 2849487 30 100.0 30 .............................. TGTCAAAGCCCATCTTTTCCAAGACTTTGA 2849427 30 100.0 30 .............................. AGAAAGGAAGACCACGTAAACGGGGCTAAT 2849367 30 93.3 30 ............................GC GACTATCTTCATCTGCGTAATATTTCATTT 2849307 30 93.3 30 ............................TT TGAGCAATTCAATGTCACCAAGAAAGACAT 2849247 30 93.3 30 ............................GC GAACTGGAACTCGACGAGCTTTAGTAATGG 2849187 30 96.7 30 .............................T TAAAATGAGATTTTTCTTCATTTAGTATTT 2849127 30 93.3 30 ............................GC GCATGGTTCAGCAAGTAAAATATGCACCGC 2849067 30 93.3 30 ............................TT TTGCAGTAGCTGCTCCTACTACTCAAGCAA 2849007 30 96.7 30 .............................T ACATAGCCAAGGTCATTAAGGGCCTTGATA 2848947 30 96.7 30 .............................T TTGGTCACAGTATTGTGCCAAGCGATATAA 2848887 30 96.7 30 ............................C. CAATAGGGTACTCGCCTAAACTCATCATTT 2848827 30 96.7 30 .............................T TTGCTGACTTGACGTCATCAAAATGAGCAT 2848767 30 96.7 30 ............................T. AACCATTAATGACCCTGCAAAACACTCCGG 2848707 30 93.3 30 ............................TC ATTAAAGAGGGTTTTGAGCTAGCTGTTCGC 2848647 30 96.7 30 .............................T TGTAAGTGACAGTGCCATCTAAATTAATTG 2848587 30 93.3 30 ............................TG CGATCACTCGGGCAGCATCAAAGAATGGTT 2848527 30 93.3 30 ............................CT TGCCCTATCGAACTAACAAATGATTGGGAT 2848467 30 100.0 30 .............................. CAACCTTACCAACTAATCGGCAATCCTCTG 2848407 30 93.3 30 ............................GT AAAAAGTAAAACCCTCAAACAAATAAGGCA 2848347 30 96.7 30 .............................T TTGCTGACTTGACGTCATCAAAATGAGCAT 2848287 30 96.7 30 .............................T CCTGCCCGCTTCCGAAACCATGATCATGAC 2848227 30 93.3 30 ............................TT TGAATCAGTACCTTTTAGGAAATCTTCTAG 2848167 30 96.7 30 .............................T CAATTTCAGGTGTGAAAAAACGTTCGCATT 2848107 30 96.7 30 ............................T. TCACCCTCAATTCGTGCTTGTACTTCTCGT 2848047 30 93.3 31 ............................GC GACTATCTTCAGCTGCGTAATATTTCATTTC 2847986 30 96.7 30 .............................T CTGCATGCGCTAATTGTTTTTCAATCCATT 2847926 30 96.7 30 .............................T GAGAGGGCTCCTTGTTCAAAACCTTGTTTA 2847866 30 93.3 30 ............................TC TCACTGCCGAGTCAAATACTGCTTCCAAAG 2847806 30 93.3 30 ............................TG CAAATATTCCCAGCAATACACGCAGCACAG 2847746 30 93.3 30 ............................TT TGAAAGACTTGAACGTGGTCAAGTCCTCCT 2847686 30 96.7 30 ............................C. AGCCAGTTACAGAAGAACCACCACCCACAG 2847626 30 93.3 30 ............................TC TGGGACACAGCTAAACCTTGTACAATCTTG 2847566 30 100.0 30 .............................. TAGCACTTAATCCCTTTAAAACTGGAAGGT 2847506 30 93.3 30 ............................TG GTACAGGTCTTTCCTACACAACGCAGAGTC 2847446 30 93.3 30 ............................CG CTGATTTAGATAAGAACGGGACTGTTCTTA 2847386 30 100.0 30 .............................. GAAACTTTAATTCCAGTTGTTGATAGAGAT 2847326 30 96.7 30 ............................T. GAAATTGGGATGCTGTGCGTCAAGACCTTT 2847266 30 96.7 30 .............................G CAACTGTGAAATTTAGTGATTTTCAAAAGC 2847206 30 93.3 30 ............................TT TGTGCCATTCCTGCCATCAATGGTTTGACC 2847146 30 93.3 30 ............................TT GTATCCATTGATATACATAGCCGCTGAAAG 2847086 30 93.3 30 ............................TC CAAATTCCATTAGCTTGAAATCAAATGCCC 2847026 30 96.7 30 .............................G AAACAACTGTGACCAAGCGAGACTTGTCTG 2846966 30 96.7 30 .............................T TATGAAGTCACCGTGCGTTTAGTTGGAGTT 2846906 30 100.0 30 .............................. TGTAAGTAAGCATTTTATTTAAGGTTGTTC 2846846 30 96.7 30 .............................C AAGAATCTCTTTGTTTTTAGGATCAAATGC 2846786 30 96.7 30 .............................G TAGGATAGATTGTCTTTTTACGGACAACAA 2846726 30 96.7 30 .............................C AGTAAGGGCTTCCACCCTTACAGCGCATCA 2846666 30 96.7 30 .............................C TCACGCCAAGCTCTTACTTTCGCTTGAGCT 2846606 30 96.7 30 ............................C. ATGCAGCAAAGCTATATGTCAACTGTACAT 2846546 30 100.0 30 .............................. ATCAAGCGGATACACAGTTTGTGATGTCAT 2846486 30 93.3 30 ............................TG TAGGCCATTCAGGTGTCTTAGCTTGGTACT 2846426 30 96.7 30 .............................T GTGCCTTCCTCTGGAACACTCGCAATACCA 2846366 30 100.0 30 .............................. TTGCCGCCATCAGTGATGACTGTGTCTTTC 2846306 30 96.7 30 .............................G TCAGCGGTAAAACCAACAGATAGCCCATTT 2846246 30 93.3 30 ............................GT ACATGGCACCACATCTACAGTGGCATTCGA 2846186 30 93.3 30 ............................TG CCGTTCAGCTCTACTTAGTGGCTCTGAAAA 2846126 30 93.3 30 ............................TC ATGAAACGCCTCCAGACGATGACAATTCAT 2846066 30 96.7 30 ............................T. GATATGCAAGGGCAATCAGAAGTGTTAGAT 2846006 30 93.3 30 ............................GT ATGGACGGTGGTAAGGGTAAAGATGGGAAA 2845946 30 96.7 30 .............................T AGAATCGCCAGTAACACTGTGCCAGTATTC 2845886 30 93.3 30 ............................TG TTAAGCGTTTACCTTTGAGAACTTTGAAAG 2845826 30 93.3 30 ............................GG TCGTTTGAGTGATTACTTGTTTCATATTCC 2845766 30 93.3 30 ............................TG ACACAATGACAGATGATATGCCATTAGAAG 2845706 30 96.7 30 .............................T CGAATCCCCAGTAAGGCTATGCCAATATTC 2845646 30 93.3 30 ............................TT GAGAACCTTAAACGCTTCCCAAGTCTTTTC 2845586 30 96.7 30 ............................T. ACATAATCTTCCATATTCTTGTGCTGTGTG 2845526 30 93.3 30 ............................TT TGGTTGCCCCTTTCGGGGCATTTAAAATTA 2845466 30 93.3 30 ............................CT ACGGCAATCTTTAGTGCTCTTTTGCTATAA 2845406 30 93.3 30 ............................TT TGATTTACACAGCGGGCTGATGCGGTTTTC 2845346 30 93.3 31 ............................CG CAAGATGGTGGAATTTCTGTGCTGCGTGTAT 2845285 30 93.3 30 ............................CC ATCGTCATAAGCTTTGAATCGTGTGCCTTC 2845225 30 93.3 30 ............................TT CAAGAAAAAACAGGTATTAAGAAATTAAAA 2845165 30 96.7 31 .............................T ATGCAGATTGCTGAACACGCATAGAGTTGAT 2845104 30 93.3 30 ............................TT TAGCCGTGTACTGGTTGCCTTTGAAAGACT 2845044 30 93.3 30 ............................CT ACTCAAAGGGCTTTAACACAAATCCCAACA 2844984 30 100.0 30 .............................. TTCCTTGCAACGGCTCTTTACCGCAACGAC 2844924 30 96.7 30 .............................T TAACAGAACGATGCCGTTTGTTTGTAGATT 2844864 30 93.3 31 ............................TT TGCGTGATTAGTATTGAGATAGCCAATTACA 2844803 30 93.3 30 ............................GG TGAGTCTGACCAACAAATTAAAACCATAGT 2844743 30 100.0 30 .............................. GAACTAACAAGAGAGCAAGCAATCTTAGAA 2844683 30 93.3 31 ............................CC GATTCGCTTGGTGCCGTAGGCAACGGCATCC 2844622 30 100.0 30 .............................. GCGCCATTGCAGTAGTCTGCTTGTGTTCCT 2844562 30 93.3 30 ............................GT ATGGTGGATTCATCCAGCATGTTCCCGTCC 2844502 30 93.3 30 ............................TC AGAGGGCTTTTACGCAAATGCAAGCATTAA 2844442 30 93.3 30 ............................TG TAAGAACTTTGCTATAGCTTCTTTACCTAC 2844382 30 96.7 30 ............................G. ATTGCAAAGTGGAGGATGTGTGATGGAGAA 2844322 30 93.3 30 ............................TT ATTCAAATCTGTCATGCTGCCACCTTATCC 2844262 30 93.3 30 ............................TG AGTATTGGTGGTGAAATACAACCTTGCGTG 2844202 30 93.3 30 ............................TG CTGGACTGAACTGACCATTTTGTTTGATTG 2844142 30 96.7 30 ............................T. ATTCTCTTCACGTTCTAACTGAGCAATAAA 2844082 30 93.3 30 ............................TT TAATACCCGGTTCAAGTATGGAGAAAAAAT 2844022 30 93.3 30 ............................GT ATGGTGGATTCATCCAACATGTTCCAGACC 2843962 30 93.3 30 ............................TC TGGATATTCGGTCATCCAAAAGTAATAGCC 2843902 30 96.7 30 .............................G CAAGGCATGTCGCTTGGTGATTTATCAGAT 2843842 30 96.7 31 ............................C. TATAAGCGGGTGTGATTGCTGTGTTTTTTAA 2843781 30 93.3 30 ............................TT TGTACCAAGTCTTAATCTTTTTTACTAATT 2843721 30 93.3 30 ............................GT CAACAGATCAACACACAACGTCAAAACCGT 2843661 30 96.7 30 .............................T TGGGATGTTATGAATATGCGACATTACCAA 2843601 30 93.3 30 ............................TG ATAAGGAAAAGGTATTGCAGGTTTAAGTCC 2843541 30 96.7 30 .............................C AAGACGCTTGAGGTCTGAAAGCATCACATC 2843481 30 96.7 31 ............................C. ATACCAACAGGACCACCAAGTAAACCTAAAA 2843420 30 100.0 30 .............................. TTGCTGCAATGATTGAACCGCCCCACAACA 2843360 30 96.7 30 .............................C ACTTTCTGCATTCTTTCTGATTGAACATGT 2843300 30 93.3 30 ............................CT AAGAATCCATTGAAGATTACTACAACTGGT 2843240 30 93.3 30 ............................GT CATCATTGAATCTACAACCAATATTGCCAA 2843180 30 100.0 30 .............................. AACGGTCAATGTGTTAATTTGCAATGTCCA 2843120 30 96.7 30 .............................G CAATTTATGGTAGATGAATCAGAAACACAA 2843060 30 96.7 30 ............................T. AAACCGTCTATATGTTCTACCGTAGCAGTA 2843000 30 93.3 30 ............................TG TACGTCAAATTACTTCTTATTGTAGTTGGG 2842940 30 93.3 30 ............................TT CATCATCAAATAAATCTTCGTATTTAGTGA 2842880 30 93.3 30 ............................TG CTGCTTGAACAACATGAATTGCCCATTCAG 2842820 30 100.0 30 .............................. AAATATTGATACGATGGATTAACAACAGAA 2842760 30 96.7 30 .............................T GACGGTTAGTTACTTTTGATGTACCGCCAC 2842700 30 96.7 30 .............................C TAACTCACCGCGATAAATAGACGCGATACC 2842640 30 96.7 30 .............................G AGACACAGAAAAAGAATGTGAACAATGGGC 2842580 30 93.3 30 ............................GT CGATTAAATCAGTCAAAGGACCCTAAGCCA 2842520 30 93.3 30 ............................TC AAACTCACAACCTAGAAAAGATTGCTAAGG 2842460 30 96.7 30 .............................T GAAAAAGCCCCATTCGTTGTGAATAGGGCT 2842400 30 96.7 31 .............................C CAAAAGCTTTACGGTAAGACACGTTATGCAG 2842339 30 96.7 30 ............................T. CGAAAACAAAAGATACTCATGCACCAGAGA 2842279 30 96.7 30 ...............T.............. CAGCATTTACACCAGCAACCTTTAAAGCAG 2842219 30 93.3 30 ............................TG TTACATGCCCAATTGGTTGGCGCATGTCAT 2842159 30 93.3 30 ............................TT CTAAGCGAAGGCTAACGCTCACATTCAAAA 2842099 30 93.3 30 ............................TG TAAAACCGAATCCCAAGCTGAATAGGTTTT 2842039 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 2841979 30 93.3 30 ............................TT GTTGCGGCTCTCGCATGATGTGGTTTGATC 2841919 30 100.0 30 .............................. CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 2841859 30 93.3 30 ............................TT GATGCTGAAAACTTCACAGCAGGCAATCCA 2841799 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 2841739 30 100.0 30 .............................. CTGACTAGTGATTTGAGGAATGTGCTCACC 2841679 30 96.7 30 ............................C. AACACAGCATTATTGGGCCTTCAATACGAT 2841619 30 96.7 30 ............................G. TGCAGGCGGAGTCTGCTATGCGACTGGTAC 2841559 30 96.7 30 .................T............ ATAACCACGGTTATGGTAAGTCACTTTTAC 2841499 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 2841439 30 63.3 0 ...T...A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== =============================== ================== 160 30 95.2 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTACATTTAGGTCAAAGTGATGGTGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //