Array 1 17750-16608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAJA010000004.1 Clostridium saccharobutylicum strain DJ179 NODE_4_length_149265_cov_16.027951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 17749 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 17683 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 17617 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 17552 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 17487 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 17421 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 17357 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 17292 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 17226 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 17161 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 17095 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 17029 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 16964 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 16899 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 16834 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 16769 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 16703 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 16637 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTAATATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : ATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 15448-15739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAJA010000070.1 Clostridium saccharobutylicum strain DJ179 NODE_70_length_15781_cov_10.121179, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15448 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 15514 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 15578 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 15644 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 15710 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : AGTATAAATACGTTTCATTCTGATAATAGTTACGTGATTAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 13985-12193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAJA010000074.1 Clostridium saccharobutylicum strain DJ179 NODE_74_length_14018_cov_12.483538, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 13984 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 13917 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 13852 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 13788 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 13722 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 13657 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 13592 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 13526 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 13461 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 13397 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 13331 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 13265 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 13200 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 13135 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 13071 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 13005 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 12940 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 12875 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 12809 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 12744 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 12678 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 12614 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 12547 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 12482 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 12416 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 12352 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 12286 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 12222 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : GTATAAATACGTTTCATTCTAATAATAGTTACG # Right flank : TTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //