Array 1 26487-27490 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWU01000017.1 Salmonella enterica subsp. enterica serovar Concord strain BCW_2868 NODE_17_length_66244_cov_3.45531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26487 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 26548 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 26609 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 26670 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 26731 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 26792 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 26853 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 26914 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 26975 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 27036 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 27097 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 27158 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 27219 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 27280 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 27341 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 27402 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 27463 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43760-45803 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWU01000017.1 Salmonella enterica subsp. enterica serovar Concord strain BCW_2868 NODE_17_length_66244_cov_3.45531, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43760 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 43821 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 43882 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 43943 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 44004 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 44065 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 44126 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 44187 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 44248 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 44309 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 44370 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 44431 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 44492 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 44553 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 44614 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 44675 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 44736 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 44797 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 44858 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 44919 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 44980 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 45042 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 45103 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 45164 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 45225 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 45286 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 45347 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 45408 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 45469 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 45530 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 45591 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 45652 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 45713 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 45774 29 93.1 0 A...........T................ | A [45800] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //