Array 1 6008-5248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZO010000003.1 Listeria farberi strain FSL L7-0072 NODE_3_length_485874_cov_176.670802, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6007 36 100.0 30 .................................... TGAATATACCGGGGTATTTATGGAGGATAG 5941 36 100.0 30 .................................... AAAAATTATCTAACACTTTGGACTCATTTG 5875 36 100.0 30 .................................... GCACATTGAAGAACAAACATCCGGAGTATG 5809 36 100.0 30 .................................... AAGAAGGACGTATAGCTGCGGCGAAAGTAC 5743 36 100.0 29 .................................... TTTTCTCGTTCGATATAGCGATGGACATG 5678 36 100.0 30 .................................... GTTCATCTGTCGCTTTTCCTAATACATCTG 5612 36 100.0 30 .................................... TCATTGCTTATGGTGCTGGTGCGGTAAGAA 5546 36 100.0 30 .................................... GTGTAATGTAAAAGGTTTCACGCTTGACAA 5480 36 100.0 30 .................................... CGGCAATGCTAGATTTCATGTTTCGTACTT 5414 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 5348 36 97.2 30 .........................A.......... AGAGAGGATGAACTCTAAATAATCGGAAAT 5282 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAATTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGAAGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGATTTTCGCAAGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATATAAATTTCAAATGATCTTTGAAAACTAAATAGATTTTATATGAACCATAAAATAAGTATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : ACATCTCTCAATCTACTCCAGCTAGAAAGAGTTACACCATTATGAAAGAGGGACTCCAAACATTTTAACCCAACCTGCAATTTCCAACTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGCGAAGAGCAAAAGAATGATTAGGAATCTAAAAGTTTGAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCAATACCTTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAATTTTAACACCAGAAAAGTTGGTTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACAGCACTTAAAATAAAAAGGAGAAACCTTATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCGTAGTACTAACAGGATGCTCCACCGCCGAAAAACAAACAAAAATAGAATATACAGAAGCAACAGGGACAATAGAGCAAGTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 288625-289043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZO010000004.1 Listeria farberi strain FSL L7-0072 NODE_4_length_366220_cov_150.223410, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 288625 29 96.6 35 ................A............ GGTTATAAAAGTGCTCAATAAACAGGAACACACCG 288689 29 100.0 36 ............................. ATCCTATTGCCCAGTAAAAGCCTGCGGTTGAACGTT 288754 29 100.0 36 ............................. AAATGGAAACTATATAAATTTCTAAAAAAGAAATAA 288819 29 100.0 36 ............................. TGCGTGAACATGACTCCCTTAACATGTGCAAACACC 288884 29 100.0 38 ............................. CCGAATTTCAGTAATGAGTTTCATTCAAAAGTAGAAGA 288951 29 96.6 36 ................A............ TCTGGTTACACTATTGACAAAAACTCAGGTAAAGTA 289016 28 75.9 0 ...........GC..CA......-A...G | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 95.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCGGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTACAAAACTCAAAAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATTGGACGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTTAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAATCTGTCGACCAGCAGTAACGTAAAAAACACCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTCATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGAGAGTAAGAAGAAAAGCGCACGC # Right flank : GCCCAATATATAATCTTTGCTCACATTTAAAAATTACATTTTCAATTTATATCCATTAAAATATTGCTTTTACCAGCTATCTCAAAAACAAAAAAATAATCTGGAGGACATCGATATGAAAAAAGTTTTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGTTGTTCATCACAAAACGAAGGGGTAACGAAAGAAACTGCCATTTCGAAGACAATCTCTATACGAGCGGACTACACTATTCCAGCAAATTTGGAGGAACTAACAGCGAGCAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACAATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAGAAAATAGATATCTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATAAAGAATATACCTTGTTTCTTAACGAAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //