Array 1 81540-81963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQX01000026.1 Streptococcus pseudopneumoniae strain 843_SPSE 262_166582_2002061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 81540 35 100.0 30 ................................... AATTGGCTCATCGTTACAAACAAGCTGGCA 81605 35 100.0 30 ................................... CCACATAGACACCATTGGTAGCAGTCGCCT 81670 35 100.0 30 ................................... TACTATTATGATGGATGTATTAGTTTTACT 81735 35 100.0 29 ................................... AATGTCTCAAGCTTGGTCCCCTTAGGCAG 81799 35 100.0 30 ................................... GCCCATCAGTTTCTTCCTTCCAATCGGATA 81864 35 97.1 30 .........................C......... CATTTTCGTTCTTCTTGTGTGAGAGTTTCT 81929 35 91.4 0 .....................A...C.A....... | ========== ====== ====== ====== =================================== ============================== ================== 7 35 98.4 30 GTTTTTGTAGTCTCCAAAATTGTGATCGATAAAAC # Left flank : ATTCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGTCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTTAGTAATAAATCAGCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTCCGAGGGGGCTTGCAGACAGTTACTCGGCTTGAAAAGCCGAGTAACTGCGCACCTTCATGGTGTCATTAGCTGATACCATTTGAG # Right flank : CCTCAATAAAAAAGCCCTCTAAAATTAGAGAGCTGATTTGAGCCCGGGCTAAAATCCTAGTGAAACAAAAAAATCTCCCCGAAGGGAGATGATCTGGTTTATTTTACCTTACAGTGCTAGGAACCGTAACCGAAGATAATACTTGAGTATATCGAGGTAGGGTGACAAAAGTAAAAAAGCTCTCTGAATATCAGAGAGCTCAAGTCTTGCTGGATAAAACGTTTATAGACTAGGCGACGAGGCGAAGATTGTACTAATGGTACATCGAGCTGAAGCCAATGAAGTATAGAAACGTTTTAGACGCAAGATTAGCGACGAAGTCCAAGAGAGTTGATTAACTCACGGTAACGGTTAACGTCGTTTTTACGCAAGTATGCAAGCAAGTTACGACGGCGACCGATTTTCTTCATCAATCCACGGTAAGTAGCGTGGTCTTTTTTGTGTTGTTTGATGTGTTCGTTAAGGTGGTTGATTTCCCAAGTAAGGACAGCAACTTGAAC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCCAAAATTGTGATCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 36959-34941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUQX01000061.1 Streptococcus pseudopneumoniae strain 843_SPSE 345_53345_771281_249+,184+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 36958 36 100.0 30 .................................... TAGATACCCTCGTCCATAATCTGTCGCTAC 36892 36 100.0 30 .................................... TTTTGACTTGCTTTTCCATGTCCCCTTTAG 36826 36 100.0 30 .................................... GTGACACAATCCGCTTAACTCGTAAGGGTA 36760 36 100.0 30 .................................... TAAGACTGTCGGTAGATGTGACAGCCTTAA 36694 36 100.0 30 .................................... TTTCTTAGAACAGGTTCCTGAGATGGTTGG 36628 36 100.0 30 .................................... TGTTTTTTCAGTTTGACCCATTTACCTTTT 36562 36 100.0 30 .................................... CTTCTTCCGTGCCGTCTCCTTCTCCCATTT 36496 36 100.0 30 .................................... AAAAGTACAAGAATCGGCGCCAACTGGACT 36430 36 100.0 30 .................................... ACTCAGCGGTTTCGAAAAGTAACGCAGACG 36364 36 100.0 30 .................................... CAGTGCGGTAGTAAATGCCATGGCTGGTGT 36298 36 100.0 30 .................................... ACTAGTAGCCTATACTTCAGAGATTAGAGA 36232 36 100.0 30 .................................... ATAACAGAGTAGTAATTAGAATAGAGGACA 36166 36 100.0 30 .................................... GATTTACTGGTGACATTGAGAAACTTAATG 36100 36 100.0 30 .................................... ACACACGATGAGGGATTTTACTGGTACGGC 36034 36 100.0 31 .................................... ACCTGCTGGGGTTTGTTCCATCATCAATTTA 35967 36 100.0 30 .................................... CTCGTTCGAACTTTGCGGATTTGACCTTTT 35901 36 100.0 31 .................................... CCTTCTTCATGTTCCTTTATGAAACTATCAA 35834 36 100.0 30 .................................... CTTGGCCAGACGATAAACTACTACTAATGC 35768 36 100.0 30 .................................... AACAGATTTTTAGAACCGTGCCGTCCCAAA 35702 36 100.0 30 .................................... AACTGTCGTAACCACAGTACCTATGGCAAG 35636 36 100.0 30 .................................... AATATCTTTTGTTGAATTCTCCTGAACACT 35570 36 100.0 30 .................................... TACCGCTTCTTTCGGTTGTGTAACCGCTCC 35504 36 100.0 30 .................................... TGATTTCAAGGTTATTCTCAATAACTCCGA 35438 36 100.0 30 .................................... CAAAAGTACAAATTGAAGATTTTACAAAAC 35372 36 100.0 30 .................................... TCAGGATCTCTCTTCTCAGCAATCACTTTG 35306 36 100.0 30 .................................... TTTAAGCAATTCATTGATAATCCAACACAT 35240 36 100.0 30 .................................... TTGCATTATATCTATGATGGTAATGTCAAT 35174 36 100.0 30 .................................... TAACGCCCCCATGAACCATAATATCTTGTC 35108 36 100.0 30 .................................... GTTCATTTGAACTATCCTTGCTGAATTTTT 35042 36 100.0 30 .................................... TTTTTCAATTTGACTTGGGTAAATTTTATC 34976 36 88.9 0 ............................G....TCT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.6 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACACCTTTTGAAAAAATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTAAGTGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCCCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : ACATAAAAAGCTACTCATTTTTTGAGTAGCTTTTAACTATTCCCCCTTACACATAACTCATTCCTTTGTAGAAAAGGAAAACGGCTAGTGCGACAAAAAGTAGGGTTGCTCCAATTCGCTGACTGGTACTATACATCTTTCTCTCCCATTTAACTGGAAAGATGACTGCTAGAAAGGCACCGCCTACTGCGCCACCAATATGCCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTTATCACGAAAAGCGTCAGGTAGGATTGCCCTAACTGCTGGATATAGGGGCTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAATCCATAGAGAGAAGTGGAGGCACCTGCTGCTAGGACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTAGAGCCGAAAATCTCCTCCACCTGTTGTCCAAGAAAGTAGAGTGAAATCATATTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //