Array 1 144629-145145 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLK01000011.1 Vibrio cholerae strain 136 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 144629 28 100.0 33 ............................ CGACATGGCAATTGGCCCGCCGCTTATTATGGA 144690 28 100.0 33 ............................ TGAATTACCGATGCCTGATCGAGATAGTGTTAT 144751 28 100.0 33 ............................ TCTTTGAACCTCGCGATCTGCTTCTTCTAGTTT 144812 28 100.0 33 ............................ TAACGCGTGACAGTGGGCCCTTGCGGCGTGGCG 144873 28 100.0 33 ............................ TGCCATGTCGCGCAGTTCGTCTTGCTCTAATTC 144934 28 100.0 33 ............................ TGATAGCGATCCGACCTGCGTCTCAAGTAGGTT 144995 28 100.0 33 ............................ TGATAGAGTTGATTCCAAAAGAGTGCCCGCATA 145056 28 100.0 34 ............................ TGTTGATAGATGCTAACGTTCGCCGCTTAGTTGG 145118 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : TGACCCTTTATTCACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32792-32584 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLK01000021.1 Vibrio cholerae strain 136 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 32791 29 100.0 31 ............................. GTTCAACAATTCCATCACGAGCAACTGCAAT 32731 29 100.0 31 ............................. CGAATATCCTGATCCAGCACATCATCAAAGG 32671 29 100.0 31 ............................. GGGCTGACCATTCGCGTTACTGTGTCGCAAC 32611 28 86.2 0 ....................A.T-...C. | ========== ====== ====== ====== ============================= =============================== ================== 4 29 96.5 31 GTTCACCGCCGCATAGGCAGCTGATAATT # Left flank : TTCTGAAATGATAGAGCTTGGATACTTCAATATATCGGAGTCAACACCAGCTCCTGAACAATGTAATCTGGCTGTTTTCCGGCGCAATCAAAAAATCGACCAAGCGACACCGAATGGACAAAGAATCAGAGCCGAACGTTTGGCTAAACGAGCTATGAATAGAGGCCATTCACCTATTCGATTTATCCCCAAAGACCTCGTGTTCGAACATTATCATTCTATACCGCTAACAAGTACCCGTAGTGGCAAATCATTCAGGCTAAATTTGCAATATCAACAAATTGATACAGTTCCAGATGGACAATGGGCATTCTCAAGTTATGGGCTAGCAAGTCAAGAGCTTGAAAGTAGTCCTGTTCCCGTAATTTGACCAATTTAATATTCATACTCGATAGACATCTGATTTTTAAACAAAAAACTTAACCATTAAAATAAAAGATATTATTTTGCCTTACCGGTTAACAGATTGATAAATATACACTATCTTTATACTGACCATT # Right flank : CAAAAATAGCCTTTTAAAGGCTATTTGATTTAGGTATTAATGAGGAATATAATCCTCATTAATACTGAAAAGTATTTGATAAAAAACGTACCACGTTCATTCGAGTTCACGATCAGACACTGCTGAATAAGTAGATATTAGGAAGATTGTGATTAGTGTTAAAAATGGTGGGGGTCAGAACCTAAAACAGATCTCACTATTTAGCCGAACCGCTACCAATTTTTAAGGCAACAAGTCTCGAACATCACACCGGAGAACTTCAGCTATTTGATAGGCCTTTTCGAGTGTGATGTTCACTTCTCCCCTTTCTATTCGCCCAACATAGCTCCGATCAATATCAGCAGAAAGCGCCAGTTTGTCTTGAGAAATACCTTTGTCTTTACGCATCGAGCGGACATTGTGTCCAAATTTTTTCGCTAAGTCTTTCATTTCCAATACACATTAAAAAGAAAGACTATCCGTTCTTGATGCATACATTACCACGGACTATAATCCGCAAT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCATAGGCAGCTGATAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 36-1527 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLK01000025.1 Vibrio cholerae strain 136 contig00025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 33 ............................ CAATTCGCGCGCGATGTAGGTACTACTATTAAC 97 28 100.0 33 ............................ TTCTGTAGCCAAGGTGCAAGAAATTATCACCGA 158 28 100.0 33 ............................ CCAATTGCGCGATAATGATCCGAGTCAATCGCA 219 28 100.0 33 ............................ TGACGTTCAATGTAATCGTCGACTTCGGTGGTT 280 28 100.0 33 ............................ CTTGTATTTCAACCAAATCCCCGAAACGGCGGG 341 28 100.0 33 ............................ CCATGCCAACGCCCTTCATCGGCAGAGCGCAGC 402 28 100.0 33 ............................ TGAGCTTATCATCGACGTTGAAGATACCGAACA 463 28 100.0 33 ............................ CAGACGGCTGCCATAATCGCGGCGCATCACCCG 524 28 100.0 33 ............................ TACAAACGCGCTTGGATATCGCAATTCAGAGGC 585 28 100.0 33 ............................ TGTTAAACACGATGGGTGCCATCCATACTCCTG 646 28 100.0 33 ............................ CAAAGCGGGGACGGCGTCTTTCAGTGCGTACAC 707 28 100.0 33 ............................ TACCCGCACCGCTCACAGTGTCCGTCATAAATT 768 28 96.4 33 ....................A....... CACCCAGATCACCCAACGGGGCAATCGAGCAAT 829 28 100.0 33 ............................ TTGAAAAACTCGACTAACGGGGAAAAGCATGAA 890 28 100.0 33 ............................ CCAAGTTTAGACATACCTTTTGATTGTCCACTT 951 28 100.0 33 ............................ TACAGCTTGGTATCTAGACAACATTGTTCCTGC 1012 28 100.0 33 ............................ TACGAGTCCATTCATACCATGACGGGTGATATC 1073 28 100.0 33 ............................ CACGTGAATGGTATGAGTCATTGCTCAGTGAAG 1134 28 100.0 33 ............................ CAAAGCGCGGTCACCTTAAGCCGACTTAATGAG 1195 28 100.0 32 ............................ CGATGCCATCGCAGCAAAATGGCTGGACGCAA 1255 28 100.0 33 ............................ TCGTCTCTGCTCTCAACTCTGGCGGCTCTGGTG 1316 28 100.0 33 ............................ CTTGGCACCATCCTGGGGGTCAAACCATATTCA 1377 28 100.0 33 ............................ TTGAGCAGGTAGGCCACGCAAAGCGGCTTTCAT 1438 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [1459] 1500 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.7 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : TCTACGTACCGCTTATCGGCGGTGGTTTAGCTGCGG # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-769 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLK01000055.1 Vibrio cholerae strain 136 contig00055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 ............................ TGCGGCAAGTGCGGCGGTGAATTAAAACAGTCT 71 28 100.0 33 ............................ TAGCAATCGCACCGCTATTGTACTTTTTGTGCG 132 28 100.0 33 ............................ CCACGTGGTGTGATATCAACCTGTACGGGTCGT 193 28 100.0 33 ............................ TCGTTAAAATACGACTCATATCCCGTAGCACGC 254 28 100.0 33 ............................ CAATCAACGTTACTGCAGCGACGTAGAGTAATA 315 28 100.0 33 ............................ CTTCGAGCGATTGATTCAAGCAAATAAAGAAGC 376 28 100.0 33 ............................ CCTACTATTGGCATCTATCGCAGGTACGTCTGC 437 28 100.0 33 ............................ CCTGACCTACGATGAAAAATACGATATCCCGAT 498 28 100.0 33 ............................ TCGAAATCATCCATATTACTGCAGTCCGTTGCG 559 28 100.0 33 ............................ CTTTGGGGAGCGTAAGTCTCCACGGCAGACGGT 620 28 100.0 33 ............................ TATTGATTGAATCAACCGGCACACATTCGACAC 681 28 100.0 33 ............................ TCGTTTGATGCCTTCTTTGCTTCCTTGCTCAAG 742 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : TCGCCACCAG # Right flank : TGAGGGGGCATGCTGCCAGCAAATGAAGCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59-696 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTLK01000057.1 Vibrio cholerae strain 136 contig00057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59 28 100.0 33 ............................ TCAAAAGGTTTCATTCGTTGAATCTTGCTATCT 120 28 100.0 33 ............................ CGGGATCTAACTGTTCTGTGTGGATGTTGATCC 181 28 100.0 33 ............................ CCGTCACCATTTGGGAAAAGCTCCCGCTTGGCT 242 28 100.0 33 ............................ TGGAGCCTTGATCATTATGCTTATCCGCAACTA 303 28 100.0 33 ............................ TAAAGCTCTTTCCTTTTGTGCCACCTCATTAGC 364 28 100.0 33 ............................ TCATAAGGTCAGGCGCGTAGCGCATGCGTGGCT 425 28 96.4 33 ...........G................ TAACGAAGTGTGTCGCGGCTTTATGAGCTACGA 486 28 96.4 33 ...........G................ CAATGTCTCTTGCTTCTTCGTTGTTTTCACATT 547 28 96.4 33 ...........G................ TGTGCGCGGTCTGGGCAATGCGTTCCGTGTTGC 608 28 96.4 33 ...........G................ CAAAGCCAGCGGTCAATTCAAAAGCGGAAACGC 669 28 96.4 0 ...........G................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 33 GTCTTCCCCACACAGGTGGGGGTGTTTC # Left flank : TTCCCCACGCAGGTGGGGGTGTTTCTCTAACTATTTACGTTTAGATGATGAATCAAAGG # Right flank : TGTGTGAATTATCCGTCATCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACAGGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.40,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //