Array 1 43195-44226 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXAJ01000007.1 Neisseria meningitidis strain INS-Nm983 NODE_6_length_87144_cov_68.4991, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	====================================	====================================	==================
     43195	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA      	
     43261	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT      	
     43327	    36	 100.0	    30	....................................	GCCCCTGCTCGCGCACCGCCGCAACCTGCC      	
     43393	    36	 100.0	    30	....................................	ACGGCTGCCGCAACGCCGCCCGAAACCATC      	
     43459	    36	 100.0	    30	....................................	GAGCATCTATTAGGGGTGAAGGTAGATCTT      	
     43525	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGT      	
     43591	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGT      	
     43657	    36	 100.0	    30	....................................	AGACTTAGCACGTTTAACTTGCTTAACAAG      	
     43723	    36	 100.0	    30	....................................	CAAAAACTTTTTAGGGGGGTCGAAAAATAC      	
     43789	    36	 100.0	    30	....................................	CAAAGCTATAAACACGTTTATCTGTTGTTA      	
     43855	    36	 100.0	    30	....................................	AATATTTTTTTATAAATTGCCGTCATGACG      	
     43921	    36	 100.0	    30	....................................	AAAAACTTTTTAGGGGGTCGGAAAAAATGA      	
     43987	    36	 100.0	    30	....................................	AATATTTTTTTATAAATTGCCATCAGAACG      	
     44053	    36	 100.0	    30	....................................	AGTAAGATGAGAAAATTATTGGGGGGTGGC      	
     44119	    36	 100.0	    36	....................................	GGAACACGAATGTGCCCCCGAAGACCTGCAAGCCCA	
     44191	    36	 100.0	     0	....................................	|                                   	
==========	======	======	======	====================================	====================================	==================
        16	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                                    	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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