Array 1 454255-448428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJA010000003.1 Streptomyces zhihengii strain YIM T102 map unlocalized plasmid unnamed1 assembly_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 454254 29 96.6 32 .........................A... GTCTCGGCGAGCGGGCGCGTGTGCCCGTCGAT 454193 29 96.6 32 .........................A... TACCGCACCCGTCAGGGTCGGCCTTGTCTGCC 454132 29 96.6 32 .........................A... TCACCGCTTTTCAGTCCGCCTCTGACCTCCTT 454071 29 100.0 32 ............................. CACGAGTGGCTCCGCCGCCGGCGGCAGACGCC 454010 29 100.0 33 ............................. GACGGCCGACTCGTCATACGGCTGCGGTGTGGA 453948 29 100.0 32 ............................. CGGTCGCGCGGCTGATCGCGTCGTATGCGGGC 453887 29 100.0 32 ............................. GTGCTCACGAACGGCCGGATCGAGACCGGCAA 453826 29 100.0 32 ............................. TGGAACCTCAGCGTCGACCTCCGCGGCCGTGG 453765 29 100.0 32 ............................. ACGGCGGTGCCCGGCCAGGAGTAGAGGGGTGG 453704 29 100.0 32 ............................. CGGCAAGGACAGCTCAGGTGATTCGGCGAACC 453643 29 100.0 32 ............................. GATCGCGGACCCGATCGAGAGTGCCTTGTCGA 453582 29 100.0 32 ............................. GTGAGCCCGATCCAGGTACGCGCGGGCGGCAT 453521 29 100.0 32 ............................. GACAGAAGCGTTCCGGTGTCCTGGCCGCGAAC 453460 29 100.0 32 ............................. TCGGTCGGCCCGACCCCGGGCCCGGCCGCTGC 453399 29 96.6 32 ....C........................ GTCATCGAACCTGCCCCGCTGATTGATGACGA 453338 29 100.0 32 ............................. CAGACTGCCGCGTCACGGCCGCCCTCGGACCG 453277 29 100.0 32 ............................. GGGCTCAAGGGCGCGTTGAACGGGGCCATCGG 453216 29 100.0 32 ............................. CTGTCGTTCGGTCAGCTCGGACAGGCGGACCC 453155 29 100.0 32 ............................. CTGAAGCTCCGCAGGCACCGCCGGATCAATCC 453094 29 100.0 32 ............................. CGTGTCTGACACCGAACCCGCATTCCGCATGA 453033 29 100.0 32 ............................. GCCCGCCCGGCCCTTGCCCTTTCCACTCTCAA 452972 29 100.0 32 ............................. TCGCCGTCAGTTCGCGTTGTCGCAGCCCATTT 452911 29 100.0 32 ............................. CCCGACAACTGGGCCAGGGTGGCCCAGGTGCT 452850 29 100.0 32 ............................. GACAGGTTGAAGATGAGCGACTTGGCCTTGTC 452789 29 100.0 32 ............................. GGGGACACGAATTTCCCCGACCCGCTGACGTT 452728 29 100.0 32 ............................. CGGCGGGCCCGGCACCGGGACCGGCTGCGGAG 452667 29 100.0 32 ............................. TTGGCCGACTCGGAAACACCCGACAGGCGTAA 452606 28 96.6 33 .........................-... TACTCCACCCTCATCAGCGAACTCGGCGGATCG 452545 29 100.0 32 ............................. GTCGGCCAGACGACCGAGGGCCGCACGACGGC 452484 29 100.0 32 ............................. TTGTCGTCAGTTCGGGTGTGTCCGCAACCAGT 452423 29 100.0 32 ............................. CAGAAACAGGTCCGCTGCTGAGTGTAAGGCAG 452362 29 100.0 32 ............................. CGGGCCGCGTCGACGGCGATCGGCGGGATGGT 452301 29 100.0 32 ............................. CGTTCGGCGACCCGGGCGATGAGCTCGGGGGT 452240 29 100.0 33 ............................. CATCGGTCACACCCAGGCCACCGCCGGAGTCGC 452178 29 100.0 33 ............................. AGGCCGACAGCGCGCTCTACGCGCCCTTCCTGT 452116 29 100.0 32 ............................. TCGTCCGCAAGGGCCTCGAATGCGGAATTACC 452055 29 100.0 32 ............................. CGTGCTTGCGTGCTGCGCGAGAGCGCCCAGGT 451994 29 100.0 32 ............................. AGGCCGACGGCTCCCGCCTGGCACAGTGCGGC 451933 29 100.0 32 ............................. GAGCTCGCCGCGTGCAGGCTCCTGAGTGTGGT 451872 29 100.0 32 ............................. GACCTCGGCGCCTACGCCCAGGCCGCCATCGA 451811 29 100.0 32 ............................. AGGCCGACGGCTCCCGCCTGGCACAGTGCGGC 451750 29 100.0 32 ............................. GAGCTCGCCGCGTGCAGGCTCCTGAGTGTGGT 451689 29 100.0 32 ............................. GAGATCGTCAACAAGGCCCAGGCCGAGGTCCA 451628 29 100.0 32 ............................. GACCTCGGCGCCTACGCCCAGGCCGCCATCGA 451567 28 96.6 33 .........................-... ACCTCGCCGTGCATGTGGGACCAGGTGGTGCCG 451506 29 100.0 32 ............................. ACGTCGGTGACCTCCTACGAGTGGGAGGAGAT 451445 29 100.0 32 ............................. CGCTGACCCCGGCACCCGGTGGCACACCGGCT 451384 29 100.0 31 ............................. GGGTCGTCGCGTCGAGGTCGGTCCACTCGCC G [451358] 451323 29 100.0 32 ............................. CAGTTGGACGGCTGGCTCATCCACGCCGTGGT 451262 29 100.0 32 ............................. ATCGACGGGCGCTGCCACTGGTCGAGCGTCCA 451201 29 100.0 32 ............................. ATCTGGTCGGCGTCGCAGCGGGCCGCGTACAT 451140 29 100.0 32 ............................. ACGCGGGTACTGGTCTGCCAGTCGTTGCCGAC 451079 29 96.6 32 ............C................ GTCGAGATCGGAGCCGTCTGCCTGGCCATCTT 451018 29 100.0 32 ............................. ATTCCCACGCCGAGCGTCGACAGCAATAGGTT 450957 29 100.0 32 ............................. TCGGACGTGATGAAGGGCAGGTCGAGGATCGT 450896 29 100.0 32 ............................. CCGACGTGCCGGGCGCGTAGTCGGGGGACTGG 450835 28 93.1 32 ............A.-.............. TGATGTTCACCATCGCTGTCATGATCACCGTT A [450825] 450774 29 100.0 32 ............................. GGCGTTCCCCTCATGGCCGACTATGCCGGGGG 450713 29 100.0 32 ............................. CGCCACGGATGCGCGTGGCGGGGCCCTGGCCG 450652 29 100.0 32 ............................. GTCGTGTTGCTCGCCGCCGTGAGCTGAATCGA 450591 29 100.0 32 ............................. GGTCAAGGCCGGGTCCGGCGGCGCCCTGATCT 450530 29 100.0 32 ............................. ACCGGGGAGAGGATCTTGTTCCAGACCCAGGA 450469 29 100.0 32 ............................. GCGCCGGGGCCGCCGCGCCCGGCGTGCGGCGC 450408 29 100.0 32 ............................. TGGGCCCCGGTCAGGACGGGTTCGGGCCGGCC 450347 29 100.0 32 ............................. GGATCCCGGATTCGTGCCCAGACTGAAGGGCA 450286 29 100.0 32 ............................. TCCGCTCGTTCTTCGACCGCAACGCCCAGTAT 450225 29 100.0 32 ............................. GTCGAAGCCGTCACCCTCTCCCCGGACCTGTC 450164 29 100.0 32 ............................. TCGTCATCGACTCCCCGCTCCCCCGGATCAAC 450103 29 100.0 32 ............................. AGCGCGGTATGCCTTGGCGACGTGGCGGCCGT 450042 29 100.0 32 ............................. TCCGCTCGTTCTTCGACCGCAACGCCCAGTAT 449981 29 100.0 32 ............................. GTCGAAGCCGTCACCCTCTCCCCGGACCTGTC 449920 29 100.0 32 ............................. TCGTCATCGACTCCCCGCTCCCCCGGATCAAC 449859 29 100.0 32 ............................. AGCGCGGTATGCCTTGGCGACGTGGCGGCCGT 449798 29 100.0 32 ............................. GTAGCGCCCATGTCGGCGGCGAAGTTCTCAAA 449737 29 100.0 32 ............................. CGTCCAGCCGCGCTCCCAGTCCGTGAACTGCG 449676 29 93.1 32 ..............CT............. TGGGGCACGGGCGCAGTGAACCTGGGCCGGAT 449615 29 100.0 32 ............................. GACGGTGGGCTCCGCCATGCTGCCCTCCCCTC 449554 29 100.0 32 ............................. TACTGGCTCCGCCAGCAGCAGTAGCTGATCCG 449493 29 100.0 32 ............................. TACGAATGGCTGCTGGAGCACCGGCGGATCGC 449432 29 96.6 32 .........................A... CGGCCGAGCTCGCCGCGTGCAGGCTCCTGAGT 449371 29 96.6 32 .........................A... TGGAAGTCATCGCGTTCGGCGCGCTCCGGTAC 449310 29 96.6 32 .........................A... GGCTGCACCATGATGTGCCCCTCCCTTCGGGG 449249 29 93.1 32 .......................A.A... GTGCGTGAGGCCGGTCGGCCTGGCCAGCCCTC 449188 29 93.1 32 .......................A.A... GTGCGTGAGGCCGGTCGGCCTGGCCAGCCCTC 449127 29 96.6 32 .........................A... CGGTGCCGGGTGCCGCGGCCCTCAAGGCGGGT 449066 29 93.1 32 ............G............A... TCGATCGCCGAGCTGACCCACCGCGACCACCG 449005 29 96.6 32 .........................A... CGGTCGGTCGTGAAGCCAGATCCGTTGGCCTT 448944 29 96.6 32 .........................A... TGCTCGGTTGGCGGCGGCAAGGCTGTCAAGCG 448883 29 96.6 32 .........................A... GTCATGGCGCCGCGCCGCTACAGGCGTCCGTG 448822 29 96.6 32 .........................A... GGCGGACGCGGGGCGTACCTGGCTGCTCATTG 448761 29 93.1 87 .........................A..G GACGTCTCCCGCCTCCTCGGCTACGACAACGTGGTCCCCGCGTCGGGGGTGGACCCGATCCGGCTGCGCTGCGCGACCAGATCGTGA 448645 29 89.7 32 .......T.....AA.............. TAGCTCTACGCCGAGACCAACCAGGTCGGTTT 448584 29 96.6 30 .........................A... TGCTCGTGACTACGTTGGCGAGGAGTACGG 448523 29 93.1 32 ..............A..........A... GGAAGGTGCGCCGGCTGCTGCCCTCGGGGACA GCGGG,C [448500,448518] 448456 29 86.2 0 .........T................GGT | ========== ====== ====== ====== ============================= ======================================================================================= ================== 95 29 98.7 33 GTGGTCCCCGCGTCTGCGGGGGTGGCCCC # Left flank : GGGACGTAACTATGGGGACGAGCCCATCTGGTGACAGTCCTTGTCCTTACCAACTGCCCCGCCGGACTACGCGGGCTTCTCACCCGTTGGCTGCTGGAGATCTCTCCCGGGGTCTTCATCGGCTCCCCTTCCGCCCGAGTCCGGGACATTCTTTGGGAAGAAGTGCGCACCTACTCTGGCCAGGGCCGTGCCATTCTCACCCACACAACCGACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAGGGCATCACCCTCCTCCACCGCCCCACCCAGCCGGACCCCCACACCAAGTTGACAGGTGCGCCAGGGGCAGAGGGACAAGCACCGAAACAAGGGTGGAGCAAAGCAGCGAAACGACGACGGTTCGGGGCATGAAACGGGAAGGAAAGGAATATATGCCCGAAAAGTCGGAGTTTGGCAAAGTGGGTAAAATCCATCGCCAGGCGATATAGCTCTGCAGGTCAGCTCCT # Right flank : CAGGATGACGGCCAGGTCGGGGACCGTGATGCCGACGTTGAGGGTCAGGAGCCAGTCAGCGTCGAGGCCGTCGGCTCGCTGCAGAACAAGCGTGGAGGGAAGGTAGCGGTTGCCGCCGGGCCCGTCGAGGGTGATCAGGGTGCCGGTCATGCGGTCAGTGTCTGGTCGCTGTGGATGCGCTCGTACTGCTCGCGGGAGAGGTCTGCGAGGTGTCTGTTGAGTTCCGGGAGGGTCAGTTCTCCGAACTGGAGGCCGGTGGTGAAGTTGAATTCGTCGCGGCCGCGCATTGCTTCGTCCGCGCCGTGTTCGGTGAGGTCGACGTCGCTGTAGCTCTGCATCACTGCTGGGTCGTAGCCGCGATGCACGAGTTCGGCCCAGATGGGAGAGTCTGGGTAGGGCCGGAAGGTGAAGACGCTGGCCGAAAGGTCCCCGGAAGGCGGTCGGAGAGGTCCCACAGGGCCCGGATGTGCTGGATGGTCTGCTTGGCCTCTTCGCGTGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTCTGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 467772-467983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJA010000003.1 Streptomyces zhihengii strain YIM T102 map unlocalized plasmid unnamed1 assembly_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 467772 29 100.0 32 ............................. CACTCCGACCCCGACACCGAGGTCTACGCCGA 467833 29 100.0 32 ............................. GCTCCGTTCACGGAGTCCTGGCGGGCGCCGGG 467894 29 100.0 32 ............................. GAGAACAAGTCCTACCCGCACCTGATCCGGCT 467955 29 93.1 0 ........................TG... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CGGCGGTGCCGAGCAGCGGAGCCCAGCGGTGCGGGTTGTGGCGGTACCAGTCGACGGTCTCGGCCAGTCCATCGACGAGGTCGCGGGACGGCGCATAGCCCAGAGCACGGGCTTTCGCGCAGTCCATGGCGTAGCGGCGGTCATTCGCCGTACGGTCGGTGATGTAGCGGACGGAGCTCGAGTCGGCACCGCACAGGCTCAGCAGGAAGCCGGTCAGCTCCTCGTTGGTGAGGTCGGTGCCGTCCCCGAGGTTGTAGGCCTCGCCGGGCTGCCCGTGCCGCAGGACCAGCTCGACGCCCTGGCAGTTGTCCTCCACGTGGAGCCAGTTGCGTACGTGCTTGCCGTCCCCGTGGAGTGTGACGGGCAGGCCCTTGAGCAGGCGGGTGATGAACAGCGGGATGATCTTCTCGGGGTGCTGGTTGGGTCCGTAGTTGTTCGACGACCGGGTGATGCACACCGGCACGCCGTAGGTGATCCAGTACGAGAGTGCCCGAGGACGT # Right flank : GGACGAGGGCGTTCACATGTCGGGCTGGACCGGTAGAGGCACCGCTGTGCACCGGGCGCGGATATCGGTGAAGTGCCCCCGCTGGGCGGGCGGTCCTGGCAGGCGGACAGCCCAACTGCCAGGTGCCCGGCGGGGGCCGTCACTCTCCCCGCGGGCGCCTGGTGTCCCTCCCTGCCCGTCAGGGCTTCGGTAGCGGCAGACCGGGCAACTGCGGGTGCCGCAGGTGCTGCCCGCCGTCGTGGACTTGCAGGGTGAACGTCTCCGGCCCCGGCCGGCCCGCCTCGTCGTACGAGGACAGCACACGCTCGATCCGTTCCCACAGCGGCACTGGGCCGCCCTCGCGGACCTCCCAGCGCCCGTCTACCGGAGTGAGGGTGGCGGCCGAGCCGGTGACGACGTCGACCAGGTGCACCACCTCGCCGACGGTCGTCATCTGCGCGTCCGGCACGGCACACTGAGCGAGGAACCGCAGGTGAAAGGCCTCTTCGGTCCCGGCAGTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 473573-474030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJA010000003.1 Streptomyces zhihengii strain YIM T102 map unlocalized plasmid unnamed1 assembly_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 473573 29 86.2 30 ........T.....T............TA CCGGAGCGCTCTGCCTCCATCCTCGTAGAT 473632 29 89.7 32 ......CT....T................ GTCGGCACCCGGCCCGGGGTTGCCGCCTCCCT 473693 29 100.0 32 ............................. TCCGCAGCACTGATATTTCTGTCCTACCCTGG 473754 29 93.1 32 ............T....A........... GTCGGGCCCGGCTACGTCGACATCGTTCAGAC 473815 29 89.7 32 ............TC.......T....... CTCGACCTGTCCGAGCGCACCGTGCAGTACCA 473876 29 100.0 34 ............................. GAACACCCTAAGTCACCGAAGAAGATCGACGCGT 473939 29 89.7 34 CCG.......................... GAACACCCTAAGTCACCGAAGAAGATCGACGCGT 474002 29 89.7 0 CCG.......................... | ========== ====== ====== ====== ============================= ================================== ================== 8 29 92.3 32 GTCCGCTCCGCCCGCGCGGGGCTGAACCG # Left flank : ACGTCCTGGGCGGCACCCCCGTCCCCCCCGGACCGCGTCGATCTGCGGGCCGTGACGATGACCCTCACCAAGAACGGCAAGACGGTCTCCGAGGGCACCGGCGCCGACTGCCTCGGCAGCCCACTCACCGCCGCCCTCTGGCTCGCCTCCACCCTCGCCGGGCTCGGCGAACCGCTGCGGGCCGGCGAAATCGTCCTGACCGGTGCCCTCGGGCCGATGGCAGTCGCTGCCGCGGGAGACCAGTTCACCGCGCACATCGAAGGGCTCGGCACGGTCACGACCACGTTCGCGTCCACCGCCACGGAGGGAGCCGCAGCATGAGCACGAAGGTCGCCGTCATCGGATCGGATATCGGCACCGATCTGATGATCAAGATCCTGCGGCTCTCCGACTCCCTGGAGATCGCCGCCATGGTCGGGATCGATCCCGAATCCGACGGCTTGCCCCGCGCCCGCCGCCTCAGGGGCGCCACCACCCACGAGGGCGTCGACGATGGTGGG # Right flank : GCCCCTCACCAACCCCAACGACCTGATCGCCCAGTCCGCTTCCGGGGAGGGATCAGAGGAGGAGGGCGGCGGGCAGCGTCTCGAAGGCCCGCAAGGTCGCCGCCCGGCCTCGGACGCCGTATCCGGCGGCCAGCTGGGCCGGGTGGTCGTGCAGGGCCGCGACCAGGGCGCGCAGGCCGGCCTCAAAAGCGGGTCTGCCCCCTTCTGAGACTTGCATTCTACGAAAATCCGGACCCATGGCGGCTTTTCAGACCTCTGCCGCCTCCGACCGGTCGGATGCCAACGACGTGGAACAGCAAGCCTGTCCGAAGTGTGACGCACAGCCCGGCTCGGCGTGCCCCTCACGCGGAGGTGGTCCGCGCTGCACCACGGCGAGCACGGCGGCGATGCTGTCGACCCCGCGCCCGCTGGGATGCTCCGGACGCTTCGGCGTCTGCAACACGCCACACCGCGTCGACCCCGCTCGCGCGGTGCTGATCCGACTGGTGTCCGGGCTCCGG # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCCCGCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 481167-482599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJA010000003.1 Streptomyces zhihengii strain YIM T102 map unlocalized plasmid unnamed1 assembly_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 481167 29 100.0 32 ............................. GGTGCTGCTGATGGCGGCCGCGTCGCGGTGCA 481228 29 100.0 32 ............................. ATCAAGCAGGACGCTCTCCAGGCCGCGAGCAG 481289 29 100.0 32 ............................. CTGGTACTGCTGATTGAGCACGTCCTCGGGGC 481350 29 100.0 32 ............................. ACGGCAGCGCCGAAGGAGCCGGAGCAGCAGCC 481411 29 100.0 32 ............................. ATCCGCTTCACGGCGTACCGGGCGTGCGGGGC 481472 29 100.0 32 ............................. CTCACCGGCGGCTCGTCGACCACCTGGGGAAC 481533 29 100.0 33 ............................. CGACAACCGGGGGTTGTCGCTCCAACTCGCCAA 481595 29 100.0 32 ............................. CAGGTGCTCGGGCCCATCACCGGATTGCAGCT 481656 29 100.0 32 ............................. TAGGCGATGCTGACGCCGAACCAGCGCGCCAG 481717 29 100.0 32 ............................. CTGGCCGGCGGGCGAGGCCACATGATCTCCCC 481778 29 100.0 32 ............................. GGTGCTGCTGATGGCGGCCGCGTCGCGGTGCA 481839 29 100.0 32 ............................. ATCAAGCAGGACGCTCTCCAGGCCGCGAGCAG 481900 29 100.0 32 ............................. CCCGCAGGGGGAACGCCTTGCAGGATCTGCGG 481961 29 100.0 32 ............................. CGAACACCGGGCACGGCGGCCGCACCGCCACC 482022 29 100.0 32 ............................. TCCCCGCGCGACTCTTCGTCGGTGGTGGCCGC 482083 29 100.0 32 ............................. AACTGCGCCGCCGCGGCGTCCTGCACGGTGCG 482144 29 100.0 32 ............................. ACGGGCACCTACGGCGGTCTCGGGCAGACCGA 482205 29 96.6 32 .......G..................... CGACGGGGTGCGGCCGATGGCCTTCCCAGAAC 482266 29 100.0 32 ............................. GCGCCGAAGGACGATAAGAAGCGCATGCTTGG 482327 29 100.0 32 ............................. AACGGCGACCTCACCGGACACCGGCTGGGCAA 482388 29 96.6 32 ...........C................. ACTCCCGCCGCGAACGGTTCGCCGCCGCGATC 482449 29 96.6 32 ...T......................... CGGACGGGCTGCGGGCGCGGGTCGTCGAGCTG 482510 29 93.1 31 ............T.A.............. CTCGGGCATGAAAACCCCCCGGAATAGTCGG G [482527] 482571 29 93.1 0 .....T......................T | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.0 32 GTCCTCCCCGCTGGCGTGGGGGTGCTCCG # Left flank : GAACCCGATCCTTGGCCAGGCCCTGACTCAGGCCACTGGCGCCGTGTCGCGAACAGAACTGAAACCCTGACACCTTTCCGATGTCATGCAACCCTGCACACAGGCCCACCACAGCGCGCGCACGCTCGCTCTCACCCGCAAACCCCATACCCTCCGCGATCCGCAAGCGCTGATTCTCGGACAGAAACGCATCCCACAGATGCAACGCCATAGCCGAGGCGTCTAACAGATGCCGCACCAGAGGATAGGGAGCCAACCCCGGATCAAGCCCCCGGGACTTACCCCACACCGACTCGTCCGGCAAACCCCACGCCTCAGACACCACTACCTCCACCCAACAACGCCAGTCCTTCTCTGAGAACCGGCATTCAACCACTCCCCGCCGACAACGCCCCTGGCCTCAACCAGTCCCGCTACAGTGACCCCGTGCAACACCAACCCTCCTCTCAGCAGCAGGCAAAGAAAAAGCAAAGCCACTGCTAAGGCCCAGGTCAGGAAGC # Right flank : TCGTGGCGTCGCGCGGAGATGCGTACGCCATGGCCGCTGTGGTGTCGCGTCCTGGCAGTCGGGAAGTGTGTGGGCCAGGGGCGAGGTCTGGGAGTGGGATCCCGCGGACCCTGATGCTGGATTGACCCTGCATACACAGAGATCATTTACCGGACATGTGGCTCCTTGTGCCACGCGTCATCCTGCCCGATCCCGACCTGCTGCGCCCCCGCCGTCGGATCGCCCGGCAGATCCTTGGCCGCGCGCGAGGAGGCCCGGTTGACGCAGCAGGCGGTCGCCGAGCGGACCGGTCGTCGTACCAGGACATCGAGTACGGCAACGTGGCGCCGATGCTCGACTCGTTGCTGCGGATCGCGGACGCGATCGGCGTCCCACTTTCTGAACTGGTGAGGGAGTGAAGGCCGGGTGACTACGGCCGACTGCTGGCGAACTCGGCTGCAGTCAGCATCCGCTGAGGGGTCGCTCCGCCGGTGGCATCGCAGGTGACGATGACGTGGCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCTGGCGTGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 490302-495765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJA010000003.1 Streptomyces zhihengii strain YIM T102 map unlocalized plasmid unnamed1 assembly_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================================================================================================================ ================== 490302 33 87.9 28 .............................ATCA CGGGAGCCGTTCGTGAACAGCATGTCAG 490363 33 93.9 28 .............................AT.. CGCCCAGCAGGTTGAGGTCATCGAACGC 490424 33 87.9 28 ............................ATCC. GTCCCGGCACCTCGCCCCGCACTCCGCA 490485 33 90.9 28 ..............................CCT CTCCCTGAGTTTCCGGGAGGGGGCTTCA 490546 33 93.9 28 ...............................TC AGATCCAGTACCGCACCGGCCACGATGC 490607 33 93.9 28 .............................TC.. TCGCGGGTCTCGCCACGATCGCAACGCG 490668 33 93.9 28 .................A...........G... TCGCCCTCGCGCGGGGCCGGCACGGCGG 490729 33 90.9 28 .............................TCC. TCATCACCCGGACCATGGCGTCTCAGAT 490790 33 90.9 28 ............................CT.C. GCCCGAGGCCGATCAGGGGCGCGGACTC 490851 33 90.9 28 .............................GC.T ACGCGGCCATGATGCCGCCGCACTCCTG 490912 33 93.9 28 ..............................T.T TGGAGGAGATGTGCGAGCACGGGTACTG 490973 33 90.9 28 ..............................ATT CCGACGCCCCGGCCCTCCAATCCGACAT 491034 33 93.9 28 .............................GT.. ACGCGTCGTCCTGGGCGCGCAGGTCGAT 491095 33 100.0 28 ................................. CGCTGGCCGCGCTGGGGGCGTGGATGTC 491156 33 93.9 28 .............................TC.. AGACCTGGGGCTGCCGACCGACGGCACC 491217 33 90.9 28 .............................AC.C CGCCGAACCTCCGCCGGGCCCTGCACCA 491278 33 87.9 28 .............................GTCC ACTGGGAGGGAACTCCCGTCCCTGCCAG 491339 33 90.9 28 .............................GTA. TGCGCCCGCTCCACCCCGGAGTGCTCCC 491400 33 93.9 24 ............................C..A. GGGAGCCGGACCGCCGTTGCGGGT TTCC [491428] 491461 33 97.0 28 ..............................T.. TGGACTCCCTGACGAAGGGCACGACCAG 491522 33 90.9 28 ..............................CCC CGCCGACTTCAGGCGGGGGCTCTGTCTG 491583 33 90.9 28 .............................ATC. CTGCCACGTACAGCAGGGCGATCATCCA 491644 33 90.9 28 ..............................ACA CCGTGCGCTCCCGGCACCCGCTGTACGT 491705 33 97.0 28 ..............................T.. AGCTCGAGCTCGTCGGCCTGGCGGCGCG 491766 33 90.9 28 ..............................CCC ACACGGTTGGTGTGGGGCTTCTGTGTCT 491827 33 93.9 28 ..............................C.A GCCCGGCGCCGGCGGTCGACCGGTCGGC 491888 33 97.0 28 ...............................C. TGGTGCAGACCATCAAGGCGCTGCCGAA 491949 33 93.9 28 ..............................CC. CATACGACGCGATCAGCCGCGCGACCGG 492010 33 93.9 28 .............................GC.. CGGGCGGCCAAGCGGGCGGCAGGCATCA 492071 33 93.9 28 .............................T.T. GGCGCGGTCATGTCCGCAAGGATCACCG 492132 33 90.9 28 ..............................CAT CGGCGGCGACGACGAGGCACTGCGGGCC 492193 33 93.9 27 ..............................CA. CATCACCGCCGGCCTCGCCGCGGTCGC A [492222] 492254 33 97.0 28 ..............................C.. CTGGACGGTCCCAACTGCCGTTGGTGTG 492315 33 90.9 28 ..............................TCA TCCGCAAAGAGAATGCGCGGCTCTTCGG 492376 33 100.0 28 ................................. CGTACGGCTTGTGGCTGCCGGGGCACGG 492437 33 90.9 28 .............................GT.C GGGTCACGATCGCCGAGGTCGCGCAGGA 492498 33 90.9 25 .............................GCA. CCGCCGCCGCCGGGGTCGGCCGGTC 492556 33 93.9 28 ...............................CT CAGGGCCGCCGTGAAGGGCCTGGGAGTC 492617 33 97.0 28 ..............................A.. AGGAGTACCGTAAAGCACTCGCGAAGCT 492678 33 87.9 28 ............................C.TTC CACGACCGCCCGGCCGGCCCCTGGACGG 492739 33 97.0 28 ..............................C.. CGGCACCCCGCCCGGCCGCCGCTGCGAC 492800 33 93.9 25 ...................A............A CTGAGGGTCACCAGCGCGGCAGTAA ATC [492829] 492861 33 87.9 28 .............................AACT GTGGACGCAAAGACCGCCGGCGCGGCCC 492922 33 93.9 27 ..............................AC. GCCCCATGACGGTATGGGCGGTAATCG G [492951] 492983 33 90.9 28 .............................ACC. GGAAATCCTCGTGTGGGTGGATGAGGCC 493044 33 100.0 28 ................................. CCCTCGATGTCGGACGCGGGCAGGCTGG 493105 33 90.9 28 .............................GC.T CCTGGCAGACCGTATGGAGCGCCCCGCA 493166 33 97.0 29 ..............................T.. GCCAGGTCGAAATCTGGGAGTACGACGGC 493228 33 87.9 28 .............................ACTC CGCTCATCCCTGCGCAGCGACGGACTGT 493289 33 87.9 28 .............................AACT CGGCCGGCCTCACCGACTCGGCGGGCAC 493350 33 97.0 28 .............................T... GGTGACCGTGCCGACAGGTGCAAGATCA 493411 33 100.0 28 ................................. CCCTCGATGTCGGACGCGGGCAGGCTGG 493472 33 90.9 28 .............................TC.T GGGCGTGGCGCGGGGGCTGGACGTTGAT 493533 33 93.9 28 ..............................A.T CGGCAGGCTTCCGTCCACGGCCCGTTCT 493594 33 90.9 28 .............................GA.A ACGCCGCATGAACCGCACCTGCCACATC 493655 33 84.8 27 ...................A.....T.G.T.C. CACGCAGGTCCGCGAGGGCAGGTACCA G [493680] 493716 32 81.8 28 ...G.-....................G...CAC ATTCGGCGGCCCAGGAAACCGGCGAACG 493776 33 81.8 28 ...G........A.G..............GC.A TTCCGGTCATCAACTCCTACCGGAACTC 493837 32 78.8 156 ...G.......T.T.......-........CCT GATCCCGTACGGCTCCGCGCTGCTCCTCATCGTCCCCGCCGACAACGCCCTTGGCCTCAACCGGTCCCGCTACAGTGACCCCGTGCACCACCAACCCTCCCCTCAGCAGCAGGCAAAGAGGGAGCAAAGCCACTGCTAAGCCCCAGGTCAGGAAGT 494025 33 75.8 28 ...........T.GG.T........T...TC.C TGTCTGCCCTGCTGATCCAGGGGAGCAA 494086 33 78.8 28 ...........T.GG.T........T....AT. TCAGACACCCGGACCGGTGGGGCAATCC 494147 33 75.8 28 ...........T.GG.T........T...T.CC GACGCGGACCGTGCCCTGGCCGACGCCC 494208 33 75.8 28 ...........T.GG.T........T....CCC GGCCCGGTGGGCGAGGTGTTCGGATACG 494269 33 72.7 28 ...........T.GG.T........T...TCAC CCGGGCGGAACTCGCGGGCCGCCACGTC 494330 33 72.7 28 ...........T.GG.T........T...ACAC TCCTGATAGCTACGGCTTCACCGGCAAG 494391 33 75.8 28 ...........T.GG.T........T...A.CT CAGCCAGCGAATGGTCGGCGGCGACGAT 494452 33 72.7 28 ...........T.GG.T........T...ATTT CCAGCAGCTGGACTTCAGCAACGTGCAG 494513 33 81.8 28 ...........T.GG.T........T.....T. GCCTGCCGTTCGGCAGGCCACGCCCCGT 494574 33 72.7 28 ...........T.GG.T........T...GTCA ACGACGCGAACATCTACCACCTGCACGA 494635 33 72.7 28 ...........T.GG.T........T..AA.CA CTACCAGTCCCGCCACGGTGTGGCCGTC 494696 33 75.8 28 ...........T.GG.T........T...TT.T CCCCGTCGGGGTTGCTCGAACGGTAACT 494757 33 84.8 28 ...........T.G..T........T......C GCTTCGCCTCGTCGGCGGTGGCGGCCGG 494818 33 75.8 28 ...........T.G..T........T...GTCT CAACAGGCCCCGCAAGCACAGAGAAGGG 494879 33 75.8 28 ...........T.G..T........T...ACCA ACCCTGACAGGCCACGGCCCCCGTCACC 494940 33 81.8 28 ...........T.G..T........T....AC. GGGCCGCGCCCCGGCGGTGTGGTGTGGC 495001 33 84.8 27 ...........T.G..T........T.....T. CACCAGGCCGAGGATGGCCCCGCCGAC A [495030] 495062 33 81.8 28 ...........T.G..T........T....C.A AGTTGCCGGAGGTGTTGGCGCCGGTGAC 495123 33 81.8 28 ...........T.G..T........T...GC.. ACCGGACGTCGCGCATGGTGTCGGTCCA 495184 33 78.8 28 ...........T.G..T........T....CCA TCGCTCCAGGGCCTGCGTCCTCGAGGCG 495245 33 75.8 28 ...........T.G..T........T...AACA AGGCCACCTGCGCCTGGCAGGCCAACCG 495306 33 84.8 28 ...........T.G..T........T.....A. CTGCAGCCGCCGTAGCCGCCTCCACGGC 495367 33 84.8 28 ...........T.G..T........T......A TCATCCCGGCGCACCGCCGGGTCTACGG 495428 33 81.8 28 ...........T.G..T........T....C.A TGCCGGCGAGGATGAGGGCGCAGGCGAC 495489 33 72.7 28 ..T........T.G..T........T..T.TAT GGCGACGGTGAGGGCCCCGACTGCTTCG 495550 33 78.8 28 ...........T.G..T........T...AC.A CGTTCGTGGGCGAGACCTGGGAGGAAAT 495611 33 78.8 28 ...........T.G..T........T....CCC CGCTCAGCCTGGAGGTGCGCGTGACGCT 495672 33 78.8 28 ...........T.G..T........T...T.TA CGGGAACGGGACAAGCGCGAGACGTCGC 495733 33 87.9 0 .............................GCCA | ========== ====== ====== ====== ================================= ============================================================================================================================================================ ================== 88 33 87.7 29 GTCCTCCCCGCCGACGCGGGGGTGTGCCGCGGG # Left flank : CCGCGACACCCAAACCCTCCTCACCACCACTCCACCCGACACCCTCCAGAACGACGACACCGACGAAGACCCAGCAGAGCGCCGCGACGTCCACATGGTCCACCTCTGGGACCCCAAAACCGGCGCCCTACCCGCCGGCGTCAACTACGCCGCAGGAAACGACTGATGCCCTCCATGGTGGTCATCGCCACCACCGCCGTCCCCGACCACCTACGCGGCGCCCTCAGCCGCTGGACCAGCGAAGTCGTCCCCGGCATCTTCGTCGGCAGCATCTCAGCCCGCGTCCGCGACGAACTGTGGCGCGCCGTCACCGACACCGTCGGCAACGGCGCCGCCGTCCTCGTCCACCCCGCCGCCACCGAACAGGGCTACACCATCCGCACCGCCGGCACCCGACGCCGACTACCCGTCGACTTCGACGGACTCACCCTCATACGCATGACCGCCGCAGCCAAGGCAAAGGAAACGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : ACCAGCGGCGCGCAGCCGGCGGGATTCCGGGCGGGTTCGGCGGTCTGGATGCGGGCGGTGCACACGGCGCTGATCAGGTAGGAGGCGACGTCGCCGAGCAGCGCTCGGGCGGGGCCGAGCAGCGCGGTCAGCGCGGCGCCGAGGTGGCTTCCGGCGGTCGCGGAAATCGCGAAAAGGGCGCCCACGCGGCTGTTGCCCCGCTGGATCAACGACCGCTCCACGAGGCTGGGCAACAGGCTGATGGCTGCCGCGTCGTGGAGGACACCGGCCGCTCCCTGCACCGCGGCGACGATCATGAGCTGGGTCAGGGTCAGGGCGCCCAGCGCGGCTGCCACCGGCACGGTGGCGAGGGCGGTCGCGCTGACCAGATCGCCGGTGATCATCTGCCAGCGCTTGGAGTGCCTTCTCTGCACTAAGTCAAGCGAGTCGATCCTTGTTGTCAGCCTGACTGGGGCCGGACGGTCGGGATGCCGAGTGGGACGGTCGACCGTTGTGCGAGT # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.06, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTGCCGCGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 602393-601748 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJA010000003.1 Streptomyces zhihengii strain YIM T102 map unlocalized plasmid unnamed1 assembly_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================================================== ================== 602392 33 81.8 43 ....G....A.....G.............C.GG CCTGCCCGTCGGCACCCGGCGCATAAGGGCTTGGCTTGGCGAC 602316 33 78.8 28 .........A...A.G........T....AA.A CGACCAGCAGCACGACGACGAGCGAGAC 602255 33 100.0 28 ................................. ATCCCGACCCCAAGCCCGGGGAGTGGCT 602194 33 87.9 29 ...............G.........C...A.A. AGAGTTTGTTGTCTGCGGACAACAAGCAC 602132 33 75.8 28 .C..........AA.A...AA........A..A GCACGTAGGCTTGGCAGACGCTGACGTT 602071 33 78.8 75 .C...A....T..A.G..............GA. GAGCTGCGCGGCACAGAACTCACTGCGGTCCTCCCGTGTTCCGGTCTTCACGACCGTCATGACCGCCCCGAAGAA T [602042] 601962 32 84.8 28 .............A.G.-......T....T... ACATGCCGGAGCCGAGCCGGGCGAGCCG 601902 33 78.8 28 AG...........A.G.............TT.G TCGCCGGCACCAACTCCTACGCCTCCTC 601841 33 78.8 28 .....T.......A.G........T....C.TG CGGAGTGGTTCGCCGAATCACCTGAGCT 601780 33 72.7 0 ...............G.......CGCA..CTGG | ========== ====== ====== ====== ================================= =========================================================================== ================== 10 33 81.8 35 GTCCTCCCCGCCGTCTCGGGGGTGCTCCGGCCC # Left flank : AGGGACCTGCGGCATCTCCTGACCCACCAGAACGGTGAGCTGCGCGACGACGAAGCCGTGGAGAAGTTCCGGAACGCTGAAGCCGAGGACGCCGCCGACTTCCTCCACGACGCCCGCGTCGGGGGACGGGTCCATCTCGGGGTGGAGCGGGTCGTCGGTGTGCTGGACAACCTTGCTTCTGTCGTGCGCCATGCCGACGTGGCCGTCCATGCGTACGTCTGGGGGGCCAAGCGTCGCAAGGTGCCACTGAACGAGCTGCACGCCGCGAAGTGCCTGGAACTCGTAGCCGAGTGAGTGGCGGTCACACGGCAGCGGGCTCGGCTTGTAGACGTACGCCGGTGGCCCTGCGTACGTGGCCGGCCATCGTCGCCAGTGCGCTGTGGAAGCTGTGCGCGGTGGCGCCGGGTTGGGCAGTGACTGCCCGCCGCCGACCCGGAGCACCTGGTTTCGCTGGCAGTGCGAGCTGCTTCGACCGTGCTCTACATCCCGGTGGTGCACGG # Right flank : TCGGCCGCGTACGCGCGGGCCGACGCGGCGGCTTGCTCGTCGAGGGGCTGGCGGTCGGGCATGAGGGCCGGCTGCTCGCTCATCGGAACTCCTGGACTTCTGTCTGGCGCGTGTGTCACGACGGTATCGCCGGGCCGCCCAACTGAACCCTCATACAGATGAACCGGGCCGAACGTCCACCCGTCCCTTGCCACACGGCGCTGCGCGCGAAGCAGCCCAGCAACGACGGGGGAGCTGCCGGTGCAGTTCCCACCGCCTCGACGGAGCACCCCCACGTTCGCGGGGTGTTCCATGCATGCCGTCCCCGGCCTGCTCCTCGGTGGCGTCCTCCGCGCCGTCGGGGGGTGTTCCGGCCGAGCGGATCGCCACTTGAGCGAGCGTTGGGTTCTCCCCGCCGACGCGGAGGTGTTCCGTCCGACGCGATCAGGTTCGCCCACCGCGCGTAGTCCTCCACGAAGGCCGACGCGCCCTCAGGGAACGCCGCGATCCGCGGTCGCTCC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.09, 5:-1.5, 6:0.25, 7:-0.33, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGTCTCGGGGGTGCTCCGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //