Array 1 654051-656616 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 654051 37 100.0 34 ..................................... TAACTTAATTGAATATAATATTTTATGAGGAATG 654122 37 100.0 36 ..................................... TCAATCCATTGCACTGCCTACATAAATGTCAGGTAC 654195 37 100.0 39 ..................................... GAGAGAAGCGTACTATACTTTACCACGGCTAACGATTGG 654271 37 97.3 33 C.................................... GAGTATGACCCCTCTATAGCCGTCAAAGTGGTG 654341 37 100.0 34 ..................................... GATAAGCACATTACTGTTGATGCAAACCCCTTCA 654412 37 100.0 33 ..................................... ATGTAACTGCTTCTGCATACTCGTTTGGGTCCA 654482 37 100.0 32 ..................................... ACGCTTTTGAATTGCTTCATTAAGCGCTCGTT 654551 37 100.0 36 ..................................... CGACTTTGAACGTAATCATTAGCGAAAAAGCTAAAG 654624 37 100.0 35 ..................................... AGCAATCTTGGCAGGTACACGCACAACTTTAGTAG 654696 37 100.0 34 ..................................... ATCGCCATCCAACACTTGCGCTATGCAGCTAGAT 654767 37 100.0 36 ..................................... ATTTCACAGCTAATTACCCCACAACTATCGGATAAG 654840 37 100.0 37 ..................................... ATGCAGCCTGATTAGATTGATCTTGCGTCTCCCCGAG 654914 37 100.0 36 ..................................... AGAAACTAAAACAGCCGAAGCAAAAAAACAAGCTAA 654987 37 100.0 34 ..................................... TAAGCAGAAATGGATCGCTTTGTGGCGTGACTGC 655058 37 100.0 34 ..................................... CGACCGCTATGCACAACGTATCGCCGGATGTAGT 655129 37 100.0 35 ..................................... GGTAGAGCAGATCTCAATATTTTGGAAGCGGCCCA 655201 37 100.0 34 ..................................... TTTGTAACCCAACCTCTATCGGCGGCAAGATAAG 655272 37 100.0 35 ..................................... GATTTTGGTGCTCAATACCGGAATGAAACAACTTT 655344 37 100.0 34 ..................................... ACAAATGTTGCTCAAGGTACTGCTAGCGTTGTTA 655415 37 100.0 37 ..................................... GTAAAAACTACCGGACAATTCCGGCAATAGGCAAGAG 655489 37 100.0 36 ..................................... CGAAGGACTTAGCGAACCGTCAAGCGGAATGCTGGA 655562 37 100.0 37 ..................................... TGCTTTGCCATTCCCAATACAGCAGCCACGGAAGTAG 655636 37 100.0 35 ..................................... AAACCATGCCCTACCTCGCCGTGCCTCTGCGATCC 655708 37 100.0 35 ..................................... ATAGAATGTGAAATCTGCTCACCTGCCTGTGTCGC 655780 37 100.0 35 ..................................... TCTTTCTATCATTGCAAATTGGTGGAGAAGATCAG 655852 37 100.0 35 ..................................... AAAGAAGTCCGAAAGAACGCAGCAAGAAAAATGCG 655924 37 100.0 35 ..................................... AGGTGAGAAGTACAAATACCAGCCCCATAAGCGAT 655996 37 100.0 35 ..................................... GAACTCCGCAAAGTTCAGACTGAATTCCTGGCACA 656068 37 100.0 35 ..................................... AAGCACTTAGAGCCATCAGACTACGCAGCCATAGG 656140 37 100.0 35 ..................................... AAGCGCTTGGTGCTGATATTACTGATTTTTTTGAC 656212 37 100.0 36 ..................................... TACTCTTATTTACCTGTGTGTATACATAGGAAAGTA 656285 37 100.0 39 ..................................... TAATGCTAAACCTCCCAAGTTTACAATGGATGATTTAGA 656361 37 100.0 34 ..................................... GGTATGCTATCATTCCATTTGGTTGGACTATGGC 656432 37 100.0 36 ..................................... AATTAAGCAATTAAGATCAACTAAGAACAGGCAGCG 656505 37 100.0 38 ..................................... AAATCGGGGGTTGTGGGTGTAATTTCCACGTTTCCAAG 656580 37 94.6 0 .......................C...........C. | ========== ====== ====== ====== ===================================== ======================================= ================== 36 37 99.8 35 GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Left flank : CGATGAATGTTGTTGTGTCCTACGATATTTCTGAAGATAAACGCCGCACCAAAATCCACAAAGTCCTCAAGTCTTACGGACAGTGGGTGCAGTATAGTGTGTTTGAGTGCCAGTTGACTGATACTCAATATGCAAAATTGCGATCGCGCTTGAACAAGCTCATCAAGCCTGATACTGATAGTATTCGATTTTACTTTCTATGCGTTTGCTGTTTTGGTAAAATCGAGCGTATCGGTGGTGAACAACCTCCTGATGAAACCATTTTCTTTGCTGAATGCGCGGATGGGTAGGTGTTGGTAAAGAGGTTTTGAAAAAATGGCTGAATTTCCCACAGTGCAAGGCTTTAAGGGAATATGCTCTGACAAAGTATCCGCGCTGCTTGCCCAGACTGGGTTTCAGCCATTTGTATTTTCATCAAACCTGATTTCATATGCTATGATTACTCTATCCGCGCTCAAGAACCTTGAAAATCTTATATATATTAGTTCTCACGCTTCCGA # Right flank : CCACATTCCGCAGGTTAGTTAAGAAAGAAGATAATATTTTCGACAAGGAGCACCAAAAAACTGGAGAATCCATTGCCTTTCCTGGGTTAAGTTGATAACTTGCTTGATTTGGGCGATCGAAACCCGCGTGAATCGACATAAAGCATTGGAACACCCAACGTAAAGTTGGAGTCGCAGTCGGTTTGCCCAGTTGATTATCAATAGTCTGTTTTGCTCGTAGCAAAGCTTGACTTCTTGCTCTTTGACCGACGAAGCTATAAACAAGCAGGCATAAACCCATAACCATAGCTAGCGCTGCAACTCGTTCAGCCGAGTTAAGGAAAACACTGCTTGTAAAGAATAACCGGTCTTTCAGAAATCGGAAACCACGTACGCGCTTGGCGCATGCTTCGCAAACGGTTGATTGTTGTGCCTTATACTCAAAGCAGCACATCCTAAAGCGCTCAATTGGCTCGCGTCAACAACATTTGTTGCCAAGATAAATCTTCCGGCTCTTCCAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 665380-665991 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 665380 37 100.0 33 ..................................... TAAAAGCTGAAAGCCTTGCTATATCTAAAATTC 665450 37 100.0 35 ..................................... TCATTTACCAGTAAATCAAGAAACAAATTAAGGAG 665522 37 100.0 33 ..................................... TGCAACTGCTTCTGTAAGGTTTATCGAGTGCAA 665592 37 97.3 36 .......................T............. TTAAGAACTGCTTGCGATCGCGCGAAAATCTCAGGA 665665 37 94.6 35 .......................T............T ACAGAATCAAGTGAGCGAACTGCAACACAGTGTTG 665737 37 97.3 37 .......................T............. AGAAGAAAATTGCACTGCTAACATGAGCAGGGGAGTT 665811 37 91.9 33 ........A...C.T...................... GAGAAAGTGCTTGATTTCGCTGATCGTAATTGA 665881 37 91.9 37 ........A...C.T...................... TTGGAATCAGGATAAACCTGTAATGCCGTGGGACTAT 665955 37 91.9 0 ........A...C.T...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 96.1 35 GTTGAAATTTCATTAACTCCCTACTAGGGATTGAAAC # Left flank : TACGAGGTCTACCACGACCAGTATGTTGTCTAACTTCGTGGATTTCAATATCAGCTAGTTGATGTAAAGGTAATTTACGACTGATGCGTTCGGCTGCAGTGGCGGCATCTTTGGAGCAGGCAAATTCTTGTTTACACAACTGCCTCAGTTCAGATTCAGCAATTGATTCGCTGTTTGGCTAAACGTTTTTCTAGTTGTTTGAGATCAGCATCTTTACGTGCTTGGCTCTCAACAACCAGCCAGCGTTGTTGCACTTCACCATAGTCGTTACAACACGAAGTAATACGATATCCATCTAAAGCGCTGGAAACAAATGCTTCTTGGCAGATCTTCTCTAACAAAAACTTAGCAGCACTGAGAGTGCATGGCACTCTTGATATCCAACGCAATTGCTTGATTTGTTGTAAATTTTCTTCCGTATACAGGGCTGCGTCTGCAACAAACAATGCTTCAATCTGCCATTGCCGCTTTGTGCAGAGTTTCTAGGGTTACTCCCACAG # Right flank : CTTTCAGCAATCTCAAACCAAAGTAGGTGTACTGAGTTTAAATTTCATTAACTCCCTCAGGACTTACGCAAAAACTCTCTGAAACTCTTATCCCTTCGTGTCCTTGGCGTCTTGGCGGTAGCCTACGGCACGCCGCTGAGTCCCAAGGGGACACGCTGCGCGAACGCGTCTACGTTTTTTCATTAATTTGCGTAAGTTCTATCCCTATTAGGGATTGAAACTATTACTTATCATTTCATCCTTGAAGCCGCTCTGCCTTAAGAGCCGCAGAGCCTCCCAAGGCTGCATTCCCAGCCTCAGGCTGGGAACGAGGCAATCTCTTAAAGCTTGTTCTATACTGGTTTTCACCTTAAGTTGACACGTATGGGCATAGAACAGTCTCTACCCCGTGGTTTATTTACTTGAAAACTGCTCTAAATTGGGTTTCATTAACTCCCTATTAACTTCACGCTGCTGGATAGGAACTGACACTACACAACTAGAGTCCAAGATTGGGGGCA # Questionable array : NO Score: 8.65 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTAACTCCCTACTAGGGATTGAAAC # Alternate repeat : GTTGAAATATCACTTACTCCCTACTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 1456288-1459567 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1456288 37 100.0 35 ..................................... ATTTTGATGGGGTGGACAAACGGGCATTACATACC 1456360 37 100.0 36 ..................................... AGCATATTTGGAGCGGTGAACTTTGACCAACGGGTA 1456433 37 100.0 35 ..................................... TTGCTTTTCGCCCGCGTCGAGCATGGCGTTCTAAC 1456505 37 100.0 36 ..................................... ATCAACCATAAACCGTTTCTTACCGCCAGCTTTCAG 1456578 37 100.0 34 ..................................... AGCTTCCAGATTGTTTTGGTCTTCTGCTGGTTGC 1456649 37 100.0 35 ..................................... AGCAAGCTAGCTTTGATGCACTTCTACAAACAACC 1456721 37 100.0 34 ..................................... GCATTTCGGGTGTGGCGCACGACCCAACGTGCAA 1456792 37 100.0 36 ..................................... AATTAACAATGGCTTGGAATTTTTTAAACTGGGACG 1456865 37 100.0 38 ..................................... TTGGTACTCTTGCTCGAAAGACTCTACTTTAGCATCTA 1456940 37 100.0 38 ..................................... AAGGAAAAGTTTCCCTAACGAGTGAGAACCGCTATAAA 1457015 37 100.0 35 ..................................... CAGAGCATCCACTTGCAGAATCAATTGGGTACTCA 1457087 37 100.0 33 ..................................... CCATCGTTAATCCTCTTCTAAGTTCTTAAATAA 1457157 37 100.0 36 ..................................... GAACAGGAAGGAATGTATCTGTGGGGTCGCAGTATT 1457230 37 100.0 35 ..................................... TGGTAGCGTTGCTAGGGGTAGGAATGCTCATAGGG 1457302 37 100.0 36 ..................................... CTATATAAATTAGTGTTAAAAGCGATTGCTAACAAT 1457375 37 100.0 34 ..................................... CACAGACTAAAGTGATAACTCTATAGCTGAGGTG 1457446 37 100.0 38 ..................................... GATATATCCAACGGCAAGACTGGACGCAAACGGCTAAG 1457521 37 100.0 34 ..................................... ACTCAATACCTTATGCAACTATATGTAACTAGTG 1457592 37 100.0 34 ..................................... CTTTTAGAAGCGTATCTAAAAGAAAATCAATTAA 1457663 37 100.0 34 ..................................... TCAGAAAATCCTAATGGATTACTGCTACTCCAAT 1457734 37 100.0 35 ..................................... TGGTTTATAGGTAATGCAAATCCTCCTATAGAAAT 1457806 37 100.0 33 ..................................... ATATAAAAGCAGCTTATAGTTACGCTATTGATA 1457876 37 100.0 35 ..................................... CCCCACTTCTAAATATCTCTGGAGCGTTCCCAAGT 1457948 37 100.0 34 ..................................... GAGTGACTGTGAAAAACGGGATTCAGTTTACGAC 1458019 37 100.0 36 ..................................... AAGAAACCGCTAAAAAGGAAGTTGATAAAAAGCAAA 1458092 37 100.0 35 ..................................... CAAAACAGCGTAATGATTTACTTGATAAAATCGTC 1458164 37 100.0 34 ..................................... GGTTCCTTGCCATTGAAGGCTTCGTACTCGCTGA 1458235 37 100.0 37 ..................................... AAAACAACTTGGTTTCAAACGACCTAAACATTTTTAT 1458309 37 100.0 38 ..................................... GTAGCAAACGAAAGTGCTTTGGTGTTTTCTCAAGGAAG 1458384 37 100.0 36 ..................................... TCGGTCGAATGGGTGTTCTTGCACCTCCAAGACGTG 1458457 37 100.0 36 ..................................... AGATCCCAGAGTTCTTACTACGCCCTGAACTCTCAA 1458530 37 100.0 33 ..................................... GAGAACTCACAGATTCCGTAAAAGACTATTTAG 1458600 37 100.0 36 ..................................... ACTGACCACCTCCGATTTGGGCGCGGGGGCAATCCT 1458673 37 100.0 33 ..................................... ATCTTTTTTTCCCATGAAAGTTACGTTGTTAAC 1458743 37 100.0 37 ..................................... ATCTTCTTTTTTGTCTCCGAGAAGCTGTCCCGCAAGG 1458817 37 100.0 35 ..................................... GATGTGACCGGGTACACTCGTACGACTTGCCAAGT 1458889 37 100.0 36 ..................................... CCATTTCTTCGGCAACATACAGCCCAGACAAATCTT 1458962 37 100.0 35 ..................................... ATAAAAGCGTGGTGATATTCTGATTCTTTTATGTA 1459034 37 100.0 34 ..................................... GAATGAATACAGTTATGGGGTAATTGGCTACAAC 1459105 37 100.0 32 ..................................... CTTCTGCTGCCAGTCTGTCGTAATCCTTTAAA 1459174 37 100.0 33 ..................................... CGATCTCATAAGATTTGGGCGTTGCCAGAACAC 1459244 37 100.0 34 ..................................... AAGATGCAACCAGTCAGCAACCTTATTAAATCTC 1459315 37 100.0 36 ..................................... GCATTTTTGTACATCCATGAACGATCATTTTCTGTA 1459388 37 100.0 35 ..................................... GGAGATCTTGGACTGTATCACGAATATTTTGGTAC 1459460 37 100.0 34 ..................................... TTATAGAAATGCGGGATGATGCTACAGTTATTCA 1459531 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 46 37 100.0 35 GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Left flank : GTACATTTGAGAGGATATATGCTACACCGTGAAATTCCAGATTTTTCTGGCAGTGTGGTAAAGTTTGTGGGGTAGGGAAGGAAGAAGTCATTAAAGTGTCTTCGGTGGGGCATCACGAAGACGTAAAGCCAAAGCTCAGGAAATGTCCTATGCAATAGCAGGAGTCACTGAAAAGCCTACACGCTCACTGGTTGCAGTCAGTGTAGGAGATGTCACATGAACTGTAGATTACCAAAATATCTCTCAGTTGAGAAGCTGGTAGCCTTCAATTTAAGAATAAATTGCGAATTAAGAAGAATTTGAGGACTTTTAGCCCTAAAAAACTTATTAGTCCAGAAAATCTCCTAAAATTGCTAAATTTTCAATTGCATCATCTTGTCGTCGGCGGATTCCTCAGTGTGAGTTACGAATCATCCAGCAAACGATTCCGCAAGAAACAGCTTTTTTGGAGCGATGGCGCAGCTTTTGTGCTTACAATACCCTCCATCTACGCTAGTAAG # Right flank : CTTTTTGTTGGGTTAGCTTATATCTTGCACCTCTGGGGATAAACCACTAATAGGCAAATAAGAGTGTAAAAAAGTGACTCCAGCAGTGAGCAGGTGTTTAAGTAGAAAAAAGACATTTATATAACCAACAAGGGGTGAGATTACGTAAATTCCTAAGGAGCAGGCGATCGCTAACTTGAAAGAGTAGATGGATTTGCACACAAGCGCAGAAATATGAGAAAAAAGGGCGTGAAAAGCATATATCAAAGCAAGAAAAATGGTTTCAATTCTTGCCCACGCCCAAAATTTAGTTTATACCCTACTATCGCTGATGGCTTCTGTCTACCAACAAAAAAATCTTGAAGCGATGTTGGGATTGTTCTTGCTGCTCACTTGGTTATCCCTTACCTCAACATAGTAAAAGCAAGTCTGCTAGCGCCTTGAGCAGATTTCTTAATATCTACGATTGGTCAACATTGAGTGTAATTCGTACTACTCGTAACCGTGTTATTCAGGAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 4 1460996-1461753 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1460996 37 100.0 35 ..................................... TTGCAGTGGTTTGATTGATGCCCAAGAGCAAAGGA 1461068 37 100.0 33 ..................................... AAACAAAGCTTGAACGAAACAGACAAAGTATTA 1461138 37 97.3 35 ..........................T.......... GGAGAATGCTGAACTAGAAATTTTACGACAAGAGG 1461210 37 100.0 35 ..................................... TCTTAATGCTATCCTTGTTACCTGGAATTGGCAAG 1461282 37 100.0 34 ..................................... AACCAATCCTTGCCCAGTACCTTGAATTGAGAAA 1461353 37 100.0 40 ..................................... GGCACATGAACGCGCCTGTTCTTTGAATTCGTTGAGTTGA 1461430 37 100.0 35 ..................................... TGGAAGCGACGTAAGAGGAAATTCCCATTTTCCAG 1461502 37 100.0 35 ..................................... AAGCTGCGCATGAGAAAAGCGCACATTTGCTCTAG 1461574 37 100.0 34 ..................................... GTGTTTTGATAAAACTTACATACGTATTACAGGT 1461645 37 91.9 35 A...T.....G.......................... ATATTGAGTTCATGCAAGCAAAAAAGCAAGCAGAT 1461717 37 81.1 0 ..................A.T.........AACCT.. | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 97.3 35 GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Left flank : CGCCTTCAAGGCTTGAAGTTTCCTGTCTATGTATCTTGGTACTATTTTCAACGTCATGATCGTAAGTATGAAAAGCGATTTGTAATTTCTACTAAAGCTCTCAAGGCTAGCACTATTTCTTGGTGGGGTAAACGGCGATGGCAGATAGAGGGCTGGTTTAAAACTGCAAAGCACCGTTTTGGGTTGCACCGCTTTGGACAGGGGACACTTTTAGGCGTTTACCGTTGGTTCGTGCTGTCCCTTATTTCTTATGTTTTGGCGCATTGGGCCTATTTATCGACCGCGCTCGGCGAAAATCCTCCCCGCGAAGCGATCGCCTTTAGAAATCTACCTGATTGGGGACAAGCCGCAGAAATCGCGTTCCAAACTATATTTCCGCATTTGGTAATGTTACTTCTTTTACAAGATATTGAACGCCTGAGAGATGTGGCACTTAGTCAAGGAATTGACATTCACATTTCCAGGTGCAAGATATAAGTTAGACTTTGGATCAATTCTTC # Right flank : CAGTAAATTCAAAAATAATTAATAATTTTTGAATTTTGAATTTTGAATTTTAGCCAAGCCAGAGTCAGGTGGATAATAAGTTCAATTTTTCAGCAATGTAGGCTCCGACAACGGCTTCCGAACATTTATTTTTCCACAAATTCAAAGATTCCTGGTGTTTTTCTTGCATGAGTTGCTTGTTTGTAAGCAGCTTTTTTAGTGTCTCCTCTAATTCGCCCCAATTTCTTATCTGAATAGCAGGTGATCCATCTAAAAACCATCGTGGAGGTAAAACTTCCGTCACTAAGATGCAACCATATCTCATTCCTTCAAACAAGCGAATGGTTTCAAACGAAGTACCTCTAGGGACAATGCATATTTTGGTATTCATCATTCTTTCAGAATAGCTGTTTCCACCTTCATTCATTGAATAATGAAAACCAGGAGTGATTGATAATTCAATTTTATATTCAGGATATTTTTCCTTGAAACTATTTAAACTTGATACCATGAATTTTCGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 5 5285496-5283716 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5285495 36 81.1 39 A..G.T......G-....GT................. CAGAACTATCTCGGTTAGCGATATTGTAAACAGCTTTTA G,T [5285479,5285492] 5285418 37 100.0 43 ..................................... CAACTGGGTACGCTTGACCGTATCCGGTCGGTGCTGATTTACG 5285338 37 100.0 34 ..................................... GTTAGTCCTAAGCAGATGCAGGTGTTGGATCTAC 5285267 37 100.0 37 ..................................... GCAGTATTTTGACCGACTGACTTTGATATGAGGAAAG 5285193 37 100.0 35 ..................................... ATCTTCCTTATATTCCGAGTAACGTCACTTTTAGG 5285121 37 100.0 35 ..................................... CTAAGTCGTGCCTTTCTCGGTAAACATCGCTAAGG 5285049 37 100.0 36 ..................................... TGAAAACTTAGATTTGGTGACCTTCACTTTGGGGAA 5284976 37 100.0 32 ..................................... ACGAACCTTGCCAAGAGGTATGTCCAAGAGAC 5284907 37 100.0 35 ..................................... AATGTAGTCTTGAAGCTCTCCCCATCTTTCGTAAA 5284835 37 100.0 34 ..................................... AAGTGGTTGTCCTGTGAACCACTATTAGAAAACC 5284764 37 100.0 35 ..................................... CTAATAAGCCCCAAGTTAAGCGATTCCGTAAATGG 5284692 37 100.0 36 ..................................... TTCTTAGGGTACTTTTTACGCTCTAGCAACAAAGCG 5284619 37 100.0 33 ..................................... CATTGGCGGGGTAGTATGCAGCAGTAACGACAA 5284549 37 100.0 36 ..................................... TCGTACCGTTTAAATCTAAAAAATTGGGGGGATGTA 5284476 37 100.0 39 ..................................... TGAAAGCAGTGACCCACAAGGCTATACAAAACGTGAAGT 5284400 37 100.0 36 ..................................... GGGCAGCAGTTGATTGCATTCAGCAATTCGTGGCAC 5284327 37 100.0 35 ..................................... TTAGATTTCGGTAATGTAGGTGATGAGTATGCTTT 5284255 37 100.0 35 ..................................... CCGTTGATGGCGGTTGTTTCGCGGGAATGGACGCA 5284183 37 100.0 34 ..................................... AGCAACAGAACCTCAATGACGTGAAAACCTTCCT 5284112 37 100.0 35 ..................................... GTTATAGCGATCGCCCCAAGGGTCAAGTAGTGAGA 5284040 37 100.0 35 ..................................... TATTCGGACGAGCCTATAGGAGGCAGGACGGAGAT 5283968 37 100.0 35 ..................................... AAATTATTAGATTATCTTGAATCTGAAAGACTTTA 5283896 37 100.0 35 ..................................... CGCATGGGTCTAGCTCTCGGGCAGTTTACCCCACG 5283824 37 100.0 35 ..................................... GCAAAGATGGCTGGATAGAGTTAATCGAGCGTCTC 5283752 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 25 37 99.2 36 GTTACAATTTTCACGAATCCCTATTAGGGATTGAAAC # Left flank : ATGTAGTTGCAGGTGAACCAGGACCAAAAAGTGATATAAATTTATTCCGAGAACGCCAAAAAGGATTTGACTCAAAACAACGGTTTAACGGCGATAAGGGGTATATAGGAGAACCATCAATTAAAACCCCGCAGAAGAAGTCGAAAAGTAGAGAACTTACCATCGAACAAAAACAAAAAAATAAAGAGTTATCACAAGAAAGAATCTTAGTTGAGCATATGATTCGGTTAATGAAAATATTTCGGGTCGCTCAGGAAAGGTTTCGATTGAATCCTCAAAAATATGAGCAGGTGATTCTGACTATTTGTGGATTAGTCAGGTTACGAATCGGAGCGCTAATATTACCAGCTTCCGGCTAGACTCGCTCCGCAAAATTTTTTCTGAAACTACTTTTTTTTCACTTGTTACTAATAGTAACTATCTCAAAAACCCATTATACCGTAGAAACTGATGAATTTGCGTTTGGCGATCGCACCCCTGAAAGTCAGTTATAGATTACT # Right flank : ACTTGATAATTAATACGCGATCGCATTAACCCAGGTTACAATTTCTACGAATCCCTAACCTCGCGTAGGGTATTCAGTAATGCTTGAGCGGTGAAGGGTTTTGACAAGAAGTATTGGATGCCAAAACTTCTCTTTTGAGCAGTCGTCCAATTGCTCATCAGCCCGCTCATTGCAATGATTTGCACGTGGGGATTCATGCGTTGCAACGTGAGAATTGTGGTAGAACCATCTATGCCTGGCATCATCAGGTCTATCAACACCACACTAATCTCATCCTTGTACTGAGCGTAGAGTGCAAGTGCCTCAATTCCATCGCTGGCAGTTAAAACCTTATAATTATGGCTTTCCAAGGTACTTTTAGTGATTTGGCAGATAGTAACTTCGTCATCCACCACCAAAATCAATTCGCCATGACCATTTGGTAGTTCTACATCGGTTGCTGCTGGAGTTTCAGTGACTTGGCTACTCGGCAAATACACTTGAAAGCGACTTCCCTTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTCACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 6 5292787-5286616 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5292786 37 100.0 33 ..................................... AACTATACCAACAGACACACCACAGCCGACTGA 5292716 37 100.0 38 ..................................... GAGAGTTGGGGGCGGAGTGTTGCCGTTCACGTTGGGGG 5292641 37 100.0 31 ..................................... TTATTCATAAAGCTTTTTAGACTGGAATCAA 5292573 37 100.0 34 ..................................... GTATTTTTACCACAAGTACAACTGCATTTTAGAG 5292502 37 100.0 37 ..................................... ATGTTCAACATCGCTTGCATCCTCTCTAAAATGCAGT 5292428 37 100.0 32 ..................................... GATCAAATCAGAACTACCGACGACAAACCGAA 5292359 37 100.0 34 ..................................... CTGCCTTATCGCTTCACTGTCGGTCGATTCAGCT 5292288 37 100.0 36 ..................................... ATACCGTTCGGTAAACAACTGGATTTACTCGAAGGA 5292215 37 100.0 42 ..................................... AGCAGATATCCTAGATACGCCGAATAGATTAACGCGTGTTTC 5292136 37 100.0 35 ..................................... AATTCGCGGCGCTATCCACATGATACGTCCGCCGT 5292064 37 100.0 32 ..................................... AGATGTTTAACGAATGACATTAATTCGTCGAT 5291995 37 100.0 38 ..................................... GGTATATAAAAGCAATGGTTGGAGTCAATGGGTGAGAG 5291920 37 100.0 37 ..................................... TTTTTAGAGATATCCATTTCTGCATTTTATGCCCAGA 5291846 37 100.0 38 ..................................... CAAAACGCATTGCACCACCCTTGCCATCGGTGGCAGGG 5291771 37 100.0 36 ..................................... ATAAAGGATGAAGTTAATACTTTCTTGCTATGGCTG 5291698 37 100.0 37 ..................................... GCTTGAAATTTATTTCTACTGAACTGGAGGCACAAAA 5291624 37 100.0 43 ..................................... GCATTATTTGCTTTATATACTGCTGAATTAGCAGTGCTTTGGG 5291544 37 100.0 34 ..................................... TTTACTCCATATTATTGTGAATATTGGATTGATG 5291473 37 100.0 33 ..................................... GCGGCGTCACCTGCTTGATAAGCTCGCTCTAGC 5291403 37 100.0 36 ..................................... ATCACTGCCGTATCGTCATCCTTCAGCAAACAAGCG 5291330 37 100.0 37 ..................................... TAAATATTTCAGTGGTCCGGTGCGCGACACAGACATC 5291256 37 100.0 35 ..................................... CAGACGCTTTTGACTTTTTGAGTCGGGGAATTAAT 5291184 37 100.0 35 ..................................... ATGTTCTGTTGTAATGATTAAGATAACGCTTTTGA 5291112 37 100.0 37 ..................................... TTTAGCCGTGGGACTCTTTCCTCCAGTACTGCCAGCA 5291038 37 100.0 36 ..................................... TAAGATATCCCTTTCTTTTAGCAAGAGAAAGTACAG 5290965 37 100.0 33 ..................................... ATTTCAAGAAAAATATCAAAAACTGCTAACTTT 5290895 37 100.0 34 ..................................... TAAATGCTCCTAAATGGATAGCTTTTCATCCTGA 5290824 37 100.0 35 ..................................... TACACGTAACCGCCTGAAACTACCTTGGAACCAAG 5290752 37 100.0 35 ..................................... CGACGAATATCTTCGCGTAATTGGACGTGATTTCA 5290680 37 100.0 36 ..................................... GTAACCGATAGAAAGCATCTGCCAAATCTGACTTTC 5290607 37 100.0 35 ..................................... AGCATATTTGGAGCGGTGAACTTTGACCAACGGGT 5290535 37 100.0 34 ..................................... GATGACGAATCTCCTTCCCGGTTGCGCCCACGCT 5290464 37 100.0 37 ..................................... CCTCTCTCTTCATCAAGAATAGAGTCAGTGCTGCCGT 5290390 37 100.0 35 ..................................... ACAAAAAAGCGCACCCTTTAAGATGCGCTCGTCAG 5290318 37 100.0 38 ..................................... TACAGTTACTTACCCCCACAAGCAAGACAAGAGTTAGA 5290243 37 100.0 36 ..................................... GAATTGATAAAACTGCTCATGCACCGCCAGTCCCAC 5290170 37 100.0 33 ..................................... GATAATTACTTGTTGTCGTCTTTTCCTTCTGAC 5290100 37 100.0 34 ..................................... AGCATTGAACCTAGAGAGGGCAAGACCCCCGCCG 5290029 37 100.0 35 ..................................... TGGACAAACCATTGGGAGTCTCTACGTAATAAGGA 5289957 37 100.0 35 ..................................... TAAAGGATTGATGACCAGCGAAGTAATCAAAGTTG 5289885 37 100.0 34 ..................................... ACAAAACTGGATAACAAGCAAAGACATACCAAAG 5289814 37 100.0 34 ..................................... CCAGTACACTGAGACAATGACTTTGCGGCTGGGT 5289743 37 100.0 37 ..................................... ACTGCTATTCACACTGCCCGTGCTAACTGCGGTCGCC 5289669 37 100.0 36 ..................................... TAGTGAATTGACTTGAGCGATCACATCCCCTGGAAG 5289596 37 100.0 34 ..................................... TTTCAATATTAATTTGCTTATATGCTTCAATTTC 5289525 37 100.0 36 ..................................... TTAGCTAATATTATTTCAGGAGTTAATTCTCTTTTT 5289452 37 100.0 37 ..................................... GTAGCGATTCCAAGGCTAGACGCTGTACCACCAATAG 5289378 37 100.0 42 ..................................... AGGAAATGTATGAAGAATTACAAGCGCGAGCCGAGAAAGAAG 5289299 37 100.0 34 ..................................... CTTCAATTTCAGCCGTTTCTAGATTAACCACGGC 5289228 37 100.0 39 ..................................... AAAGGATGTTGTTTGCTCCACTTGTTAAGAGTAGGGTTA 5289152 37 100.0 35 ..................................... AGGCGGCGGTGAGAACAACGCCGACGACGATGAAA 5289080 37 100.0 35 ..................................... TTTTGAGCCAAGTCACCGCGTTGTCGCATTCGTCC 5289008 37 100.0 36 ..................................... GCACTACTCATCTCGCTAGCGCTCGCGGTCGATGGC 5288935 37 100.0 38 ..................................... ATCACTGCGGCATACTACCCTGCTAATGAGCGCGTAGA 5288860 37 100.0 34 ..................................... AAGAATATCTAGATCAAGCTGTTAGTACTGCTAC 5288789 37 100.0 35 ..................................... CTAACTGTTCATAAAGAGAAAAGGTACGTCTAAGC 5288717 37 100.0 39 ..................................... CTCATTTATTCCAGGGAAATAAATGACTTTCTATCAGTT 5288641 37 100.0 34 ..................................... TCGACACTAATTGATGTTGCAGCATCAAAATATG 5288570 37 100.0 33 ..................................... AGAGGTTAACAACACAACACAACACAGCAGGGA 5288500 37 100.0 39 ..................................... TTCTAAGTCTTTGCCCATTGCTGTGTCAATGGCTTTGAA 5288424 37 100.0 35 ..................................... TTTTGGCAAGGGACGATGGACGGGCGTATTGTACG 5288352 37 100.0 35 ..................................... CTAAAAAGTATTTGGATGTCATTAACGCTAAACTG 5288280 37 100.0 41 ..................................... GATTTCAATTTCAATCTTGACCCCACAGGACAGCTTTACAA 5288202 37 100.0 33 ..................................... GCCTAAAATGGGTTGCCGCGTCTATGAAAGTTT 5288132 37 100.0 37 ..................................... CAATAAAGGCTGCTTCATCCAAATCGTAGACAGTAGA 5288058 37 100.0 35 ..................................... CAACGTGGTAGAAGCCATTTGAACGTTTTCGTCTG 5287986 37 100.0 40 ..................................... ACAATCTAAATAAAAGTTGAAAATATGAAGAACCTAGCAA 5287909 37 100.0 36 ..................................... TAGATTGCTGTTTGCCGCATAGCGGCTACGTTGCTG 5287836 37 100.0 34 ..................................... GCAAGTTCACCCTACCTCAGGGGTTTCCTCATTG 5287765 37 100.0 34 ..................................... TTCTAATTTATCATGTACAATCTTAGTATACTTG 5287694 37 100.0 36 ..................................... GTAAATATAGTATCTAGATATAGTTATTAGTATCTC 5287621 37 100.0 36 ..................................... TAAATTCGAGTTTGTAGCACGTTTTTGAAAGCTTAA 5287548 37 100.0 41 ..................................... ACCGTAAGCACGGTACTTGCCAGCGCCCCCAAGGGTTGTTG 5287470 37 100.0 36 ..................................... TTGCCTTATACCACCCCTTCTCCCAAGTGAAGCGTG 5287397 37 100.0 37 ..................................... GCAAGGGGAATTTTCAGGCGATCGCCACTGCGATGGA 5287323 37 100.0 40 ..................................... TTGATTGTAGCTATCTACCCAGTACTCACAAAAGTACCGG 5287246 37 100.0 41 ..................................... TGGAAAGACAGATTCGCATTGGAACCTCTTTGGGCTTTTAA 5287168 37 100.0 40 ..................................... AATTAGGTATATGCGCGGTTTTTCTTATTAATTTCCTAAG 5287091 37 100.0 36 ..................................... GCTTGGTAAATTTTTGGCTGAAGCTACGGACATTTC 5287018 37 100.0 36 ..................................... GGGAAGTTGACAGGGTGTATCTTCCACCATGCAACG 5286945 37 100.0 37 ..................................... ATGGCGATTAACTTGATACGAGTTTTTCTATAGCCTA 5286871 37 100.0 33 ..................................... GAGAATGCGATCGCGTACCACTTCATAGTTTGG 5286801 37 100.0 36 ..................................... CGCTAATCTCTTGAATCGTGCGCAGCGGTATTCCCG 5286728 37 100.0 36 ..................................... TTTTTGACCTGACCACCCACGAGTTGACGGGATTGT 5286655 37 91.9 0 ...........................AC.......T | CC,C [5286620,5286623] ========== ====== ====== ====== ===================================== =========================================== ================== 85 37 99.9 36 GTTACAATTTTCACGAATCCCTATTAGGGATTGAAAC # Left flank : ATCTTCGTTGCTCAGACGGAACTCATCCCGTCAAAAGAACAATTCAATTGCAGGCAACTTGTGCGAAAATTTCCATAGGTCATGCCTTGCGTTTGAGTTTGAGTGCAGCGTGTTTCCCCGCTTATGCAATGAATCCTGGAAATAATTCAGCCTTCGGTATAGATGCTGAAATTATCACATTGATGGTAAGTTGCGGGGGTGAGAGTTCATCGCAAATTTTATTACCTGTCGTACCATCATCTTGATTCATCTGCGCGGAGGGGTGGGTGTTTTTTTGGACTAAAGTTAAAAAATCGCTGAACATCCCATGACACAAGACTTTGGGCAGATAATAACCAATTTCTCATCCGCGCAACCTCTCAAAAGCTTGCCAATTCAAGGTTTTTGCTTGTATGATTTAGGAGAAAGTTTGAGACTTGCGTCTGAAAACGGTATTCTTTTACCCATCCGCGCAACTGAACCTAGAAAAGTAAATATAGTAAGGATTTCCGGTGCCTGCG # Right flank : ATAAAAAACTCAACTAAAATAAGAATCAACAATCTTTTATGACAACAAGAACATGAGTTCTATATCTGCGTACATTGAACAGAATCGTCAGGATACACAACGATTAGTGGGTCTAAAGTACGAGCAACTAGAGCAACTAATCAAGCAAGCGATGCGGAAGCCGCCGCTACGCGAACGCATTACACAAAGAGCGTCTTGTAGAAATGGAAGCGCAGAAAGTTAGAATTATAAATAAAGGCGGTGGTCGGAAAGTCAAGCTATCTATCGAAGAGCAAGTACTCCTAACTTTGATATATCTGCGGCATTTAACTACATTTCAATTGTTAGGCATTCAATTTGGAGTGAGTGAAACGACTGCCAATGATACATTTAATTACTGGTTTCCACTCTTGAGAGACTTGCTACCATGCAGTTTGCTTGAACAGGTAAAAAAAACGCCAGTGACTACGAAATTGTTAAAGAACTGTTAACCGAGTTTGAGTTAATAGTAGATAGCTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTCACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 7 7131938-7132414 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018268.1 Scytonema sp. NIES-4073 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 7131938 37 100.0 36 ..................................... CGTTTGCAAGATTCTCCACTAAACCGACGCCTTGAG 7132011 37 100.0 36 ..................................... ACAGAATCAATATATTGCGGAAATTCAGCAAGGGTT 7132084 37 100.0 36 ..................................... TGTTTACTTTACACAAAGAGCTATATAATACATGGG 7132157 37 100.0 36 ..................................... CGGAACGAGGATGCTGTAGCGCACTTGACGCACGAA 7132230 37 97.3 36 T.................................... CCATTTCTTTTGGGATTTATCGATTTAGCCCAGCTT 7132303 37 97.3 38 .............................C....... TGCAAACCTGCTAACAGGCATGAGTCGGTCTCATGGGA 7132378 36 73.0 0 .......T.A..C.-..T..T.C...GCA........ | A [7132400] ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 95.4 36 GTTTCAACAGCCATCCCGGCAGGTGGTGGGTTGAAAG # Left flank : CCACCTGTGCGGTCATCTAAGTGTTTGTAAGCGGTAATTGCTTGGGTAAGCAAATGCTGCTGTTAGATGAGAAAGTACTCGCACCGAGACGCATGGGAAGTATAAGGTGTTAGGGTTCCAAACAGCCCAGAACCTTAGCTCTTGACATCAAACTCTTTTAGCTTGGTGTTAGGTGCCAGAGCGGCTTGTACTAACGAAATCTTAGATTTTGGTTTTACGAGCAATATCATTACCTCTTACTTTATCACTGAAGTAAGGGTACGGGTATACCGTCACGGTGGCTACCGAACTACCACCCCCTAATTTTTATTTTTGGCGAGGCAAAGCGGGGGCAAAATCCCTGGGGCGCTGCCAATTTTTTCAAACTCTTGTCTTGACTGAATTTCATAATTTTCAAGGTGAATCAAAGTTTATTTATTAGCAGTAGAAAATTAGCTTTTAAGTAGACTTGGCAAAATCGCCTATGGAAAACAGTGAGGATAAGCATTTTGACGGGAGCG # Right flank : GATTTTGCTCGCTATATTTTCAGGAATCTCACTTTTATAGTCTTCTATCGTAAAATTATTTATTAGGGTGGTTTGAAAGGAGCACTTCAATGGCATATTGCCAGAATATGTGCTATTTATACTAAGTTGTCACAATACATTAGAGTCAATGTATCTAGCAACAAGTGTGTCTTTGTTTTGGACAATAATTCTTTAAAACTGGTTTCAACTCTGGACAATAATTCTTTAAAACTAGATTAATGGCTGAAAGCCACGAGAATAGGTGACTTATGTCCTTGAAATTTGTCAAATTGGACAATAATTCTTTAAAACTGACAATAATTATTTAATGTACATATGGAGCTAAGCGGATTCGAACCGCTGACCCCCTCAATGCCATTGAGGTGCTCTACCAACTGAGCTATAACCCCGCACTATTGTGCATTATCTAGTATATTTTAGAAATTTACTATTTGTCAATACTGCTAATCGAAGACTGGCTATTTACTAATTGCTAATGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAGCCATCCCGGCAGGTGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //