Array 1 6016-7875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEVEW010000048.1 Atlantibacter hermannii strain WEB3 DGhermannii_S78_R1_mutant_(paired)_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6016 29 100.0 32 ............................. CGCGCCAGGAGTGAGGCCTTGACCTCTGGCGT 6077 29 100.0 32 ............................. GCGGCAAAATGACAATCACAGTTGAATCTCAT 6138 29 100.0 32 ............................. ATTTAAGGCAATGGAATGCTGGTTCATATAAT 6199 29 100.0 32 ............................. CAGCCACCCGTGGTCGTAGTACGAGTCGTGCA 6260 29 100.0 32 ............................. TGACACGTCAACCGGTGTCACCTAGCACAGTT 6321 29 100.0 32 ............................. GCATTCACGTAATCCGGATCGTCGAAATATAT 6382 29 100.0 32 ............................. GCACCGAGGCGTAATAAAGTGGCTAATGTCAC 6443 29 100.0 32 ............................. CGCAACGTGGCGGGCCTTACACTGAGCAGCTC 6504 29 100.0 32 ............................. GTCGATTCCCAGGGCCGCCCGCTGTGGCTACC 6565 29 100.0 32 ............................. GAGGCCCGTTTGTGAGACCCGTCAACAATCCA 6626 29 100.0 32 ............................. GAAAACACCCGCCGCAATTAACGTCGGGATCA 6687 29 100.0 33 ............................. GATTTTGTACAACTGGCCTGAACAGAGCCTCCA 6749 29 100.0 32 ............................. TGGAACGCTCAGGACGCAGTTGATTACGCACG 6810 29 100.0 32 ............................. ATTGCGAATGATTAGCTCGTCTCGTTGCTCAG 6871 29 100.0 32 ............................. GCACAGAGCTGGCACACGCCACCGGGCCGAGA 6932 29 100.0 32 ............................. TAATTGGCAGATATCCTCTCAGGGGTTGGTCA 6993 29 100.0 32 ............................. CGGCGCGACGGCGTACCGGTGTCCTGGCCGGA 7054 29 100.0 32 ............................. GTGAGATTCTGGCTCTTCGCGTCGCTTCGTTC 7115 29 100.0 32 ............................. AAATCTACGACGGAATTCCGGGACCAGCACTG 7176 29 100.0 32 ............................. GAGGGTGAGACGTGGCTGATTTACGTAAAGCG 7237 29 100.0 32 ............................. ACTGGAGTTTTGGCGCGTACGGTTACGCCGTC 7298 29 100.0 32 ............................. GGGGCCGACACGCAGAAGAAATTTAACGAAGC 7359 29 100.0 32 ............................. AAAATCGCGCTCGCATTGATGTACGCGACGCA 7420 29 100.0 32 ............................. TGATTTTTTATCGGTGCGGCAGATCGCCGCGA 7481 29 100.0 32 ............................. GCGTTTGACGCCTACCGCGAGTGGGTTATCGT 7542 29 100.0 32 ............................. GAATTCTTCAATCTCATAAAGGCCAGCCAGAA 7603 29 100.0 32 ............................. CGGACGAACGCGCGGAGACCGTTACCGGATGG 7664 29 100.0 32 ............................. CGCAATGAAGTTTTGCACTGGCCGGGGCCTGA 7725 29 100.0 32 ............................. AGAGAGCCGAGGATAGTCAGCAGGAAAGCGGC 7786 29 100.0 32 ............................. TCAGCGCCCGTCAAAATATTCCGACGAGAGAA 7847 29 79.3 0 ............TA.A....A....GT.. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAAATACTTGCTGCGGGTGAAATTGAACCACCGCAACCCGCGCCAGATATGCTTCCTCCCGCCATACCTGAACCAGCCTCATCTGGCGATCCTGGTCTACGAAGACGTTAATAATGAGTATGCTGGTTGTAGTTACGGAAAATGTACCACCCCGTTTGCGTGGAAGGCTCGCTGTTTGGTTACTGGAAATCCGCGCTGGGGTATATGTGGGTGATGTGTCCCGACGTATTCGTGAGATGATTTGGCAGCAGATCACCTTACTTGCAGAGAGTGGCAATGTCGTAATGGCATGGGCTACTAATAATGAATCGGGGTTTGAATTCCAGACTTGGGGCGAAAACCGACGAATCCCGGTAAATTGGGATGGACTGCGGTTAGTTTCTTTTGTTCCTCTTGAAAATCAATGAGTTAGTTTTTCTAATTTTTATCAAAAAGCTGGTGAGGTTTTCTTTGCGATAAAAGTTTAGTTAAAACAAAGATATATGATTAGT # Right flank : GCCCCTGTCAGGTGTCCTACTACCGCCCATGTGTTCCCGCTTCAGCAAACCAAATCGAAATTATCCCTTCCCAGGCCACACCAAACCCTTTCTTTCCCCCCATCCCCGTTATAAACTCCCCTAAACCTTCCACCCAATGGAAGGTTACGGAGGGCACAATGAACATCAGTGATGTCGCAAAAAAAACCGGTCTCACCAGCAAGGCGATTCGTTTTTACGAGGAAAAGGGGTTAGTGACGCCGCCGCTACGCAGTGAAAACGGCTACCGAAGCTACACACAAAGCCATCTTGATGAACTGACGTTGTTGCGCCAGGCGCGTCAGGTGGGGTTTAACCTGGAAGAGTGCAAAGAACTGGTGCATCTGTTTAACGACCCAGGCCGACGTAGCGCGGACGTAAAAGCGCGTACGCTGCAAAAAGTCGCGGAGATTGAACGCCATATTGTGGAACTGAATGATATGCGCGCGCAGTTATTGGCACTGGCGGAATCCTGCCCGGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6000-4202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEVEW010000043.1 Atlantibacter hermannii strain WEB3 DGhermannii_S78_R1_mutant_(paired)_contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5999 29 100.0 32 ............................. GTCGTTTTCCCCGACCCTGTGCCGCCAACCAG 5938 29 100.0 32 ............................. TGTACCTGTGCGAAAACAGTAAATTCCTGTCA 5877 29 100.0 32 ............................. GCTGCTGTTTCTGTTTGTCGCTCAGCGCGTGC 5816 29 100.0 32 ............................. TTCGCAATCCTCAGCGGCTGGACTCACCTGTG 5755 29 100.0 32 ............................. ATTGGGCCGCTGTCATGTTCCGCGCTTCGCAA 5694 29 100.0 32 ............................. AAAACACCACAGAGAATGTATCCGGCGAGGGT 5633 29 100.0 32 ............................. TATGGCCAGTAAAAACAAACCAGAAGTTGAGT 5572 29 100.0 32 ............................. AGACGATTTGTCTGTGCGTAGGGCATCACCGC 5511 29 100.0 32 ............................. CAGGCATACGAGAGCGCAGCGCAACTCGGCAC 5450 29 100.0 32 ............................. GCAACAATGGGCCTGGTGGGATACGCGGCGCA 5389 29 100.0 32 ............................. TTACCAGCACCACGGCCTGTCTGACGTGCGAT 5328 29 100.0 32 ............................. TGACGCCCATCGACGGATTTACCCCAATGTGG 5267 29 100.0 32 ............................. TAATCGCGCGCCGTAGCTGAGCACACGTCCAG 5206 29 100.0 32 ............................. ATTACTAATATCCTCTCCGGGTTTAATACCTC 5145 29 100.0 32 ............................. GTTTGGGTAGTGCGTTCAGCCCCGTCAGGCTC 5084 29 100.0 32 ............................. GGTCAGGATATTCTGGCAATGTCCACCCAATT 5023 29 100.0 32 ............................. CTTTACTCTCCTTGCGCGCATACGCAGCCAGC 4962 29 100.0 32 ............................. TCTGTGACCATTCTCTGGGGTGACCTGGAAAC 4901 29 100.0 32 ............................. TAAATCAGGTCGATATTGGTTGAGGTAAAGCC 4840 29 100.0 32 ............................. GCCGGAGAAACCACAGCAGCGCTGATTGATAG 4779 29 100.0 32 ............................. TGAGCTGAATCAACTTTATTCCAATCTGGCGA 4718 29 100.0 32 ............................. TTCAATAATATGATGAGGAAATATGAAAATGG 4657 29 96.6 33 ............................T GATACTCAGTTATATCAGTCGCTGGTGGCCATT 4595 29 100.0 32 ............................. CGCCAACCGTGCGCCCTGTCCCGCATCGTAAA 4534 29 100.0 32 ............................. GGTTCGGTTACTGGATTCCCGTACTCATTAAC 4473 29 100.0 32 ............................. CCGGAGTAGTAGCAGAATCGGCAACTTCTACT 4412 29 100.0 32 ............................. TGCATCCCTTTGCCGTTCCAGCCATCACGACA 4351 28 96.6 32 ........-.................... CCACGCCGCCGCCGGTGAACGCGTCGCCGTCT 4291 29 96.6 32 .................A........... TGAACGAAGTGCCGGACTTGTCCACCGCAAAA 4230 29 82.8 0 .....T.T...A.T...A........... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.1 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : TTATGGTTTCGATTAACGCCTCGGCAGACGCGCTGCCGGTAACCAGCGCGGACGTGATAGTGACGTCCGCGGTGTCGACATCAGAACGTTTTTCCAGACTCTCTTTTACCCGTTTAACGCAATGGCCGCAGGAGAGACCATCCAGGGTGAGATTAACAGTATGAGACATTGTGAAACTCCTTCTCGGTGAGCCAAAACTGAGTGGCTTTGGTGACGTTATAGAAGGGTAAACCTTACAGCAAGGGGAAGGTCAAGGGGGGATTCTTTGATGTATCGAAGGGTGCTTGAAAGGTGTTCGTCCAGACATTGAGACAGGAAAGGGCGAATTAATTCAGGATTTGACGTTCATTAAGCTATCTCGGTGAATAGTCGTAGTGATGAGTCAGAGTTTCCTGACATCATATATAAATCAATAGGTTAGTAATTATTAAGATTCTGAAAAAATTGGTGGGTTTTGGCGTGTGTTAAAAAAATAAATAATTCAGTAAGATACATTTAGA # Right flank : GTCAGTGACTTAATCATTATCCCCGTTACTCCATGTTGCCTGTCCCCACGAGGCATAAAAGAAATCATTTAGATATCGGAATTTTTTTAGGTTAAGGGCCTTTTTTAACCATTAATGATTGTTAAATCATTGATTTATATTGTAACGAGTATCGAGTTTTCAATGCTGCAAGGGCAATTTTATTGCCAGCATTAAAGTTAGCTTCGTTGTTGATATATTTAGCAGGGGTTAATCTAAAATGAATTACTGACAGGGATGATGAAATGGATACGGTAGAAGAACAGGGCGGTACATATTTCTATCACGGCAACGCAAATGTCACTCCAGAAGAATTATTCTGGCTGATATTCGCTGAGAGCCTTGCTGATCATATGGGTGTTTCGGTAGAAACCGCAGCAACAATTCTGGCTGGCATGCCACTGGTGCCAAAACGCAAGGTATTAGGCGCATCCGGTTCCCGAACGAGCATCACCTCAAAAGCGGCCAGACAAATTTTAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //