Array 1 193860-190242 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSSW01000002.1 Bifidobacterium longum strain TF01-22 TF01-22.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 193859 33 93.9 36 ...............................CT TGTCGTACAATCCGCCGATGGCACCGCTGATGCCGT 193790 33 93.9 35 ...............................CG TGTCCTTGGAGAGGCGGATGGTCTCGTAGTCGGCG 193722 33 97.0 33 ...............................C. ACTCCTGCGCGTACAGGTCGCCAAGCGTCTTGA 193656 33 93.9 34 ...............................CT ACAGCAACAGCAAGACGGGCAATCGTTTATCATC 193589 33 93.9 33 ...............................CC CGCCATTGGACGCGACGGATTACAAGCGTATGA 193523 33 97.0 33 ...............................C. ATGTGATTTGAGCAAACTGGAGGAGAGCACAAC 193457 33 93.9 35 ...............................CC TTTGGTGTGATTTTCGGTTTCGCCGTTGCGCCGGC 193389 33 97.0 34 ................................G CCATCTCCACTTTGAGCTCCCGCCAATGCTTGCG 193322 33 97.0 34 ................................T TGGCTCCGCGCAGATGGACATAGCCAACCACGGC 193255 33 97.0 34 ................................T CGTTGGATTGCGCCACCTCATCGGAAATGAGCCG 193188 33 100.0 32 ................................. CGTATTGATGGATGGTGCCGTCTCCGCCTATC 193123 33 97.0 35 ................................T GATAGTCTCCTTGGGCGGCGTAGGCGGCCAGCCCA 193055 33 97.0 34 ................................G GATTGTCGCCAAACGTCGGCAGATTATAGTGGGT 192988 33 97.0 32 ................................C CCATGCCGTGCCGCCGTCGATGCGCCCGTCCG 192923 33 100.0 33 ................................. CCTCCGAAAACGGTTTGGCCTCGCTCACTTCGC 192857 33 100.0 33 ................................. ATGTTATTGATGTCGATTCCGCTGGGCACGTAT 192791 33 97.0 33 ................................C GTGATTTTAACAATTTGATGACGAAGAACAATA 192725 33 100.0 34 ................................. CGACCGACGCGGGTACCAGCATCACGGTCGTGAC 192658 33 97.0 32 ................................T ATTGCCCCTTGACTCGGGGCGGGAAGGAGAGG 192593 33 97.0 32 ................................T ATTGCCCCTTGACTCGGGGCGGGAAGGAGAGG 192528 33 97.0 32 ................................T ATTGCCCCTTGACTCGGGGCGGGAAGGAGAGG 192463 33 97.0 34 ................................T AAGTTTAGCGGCGTGACACATGATGTGTCATGAC 192396 33 97.0 34 ................................C CGCCATTGGGCAGGGACGACTATCACCGGATGCG 192329 33 97.0 32 ................................G CATAATTTTCGTCGTATTTGCGTAGGAACGTG 192264 33 97.0 33 ................................C GAATGTGACCGTGGGCCATACGGTGCAGGCGAC 192198 33 97.0 35 ................................G GTAACGGCGCGTGGGTCGAAACTTGGGTGCGGCGC 192130 33 100.0 34 ................................. CGGTGGGTTGGATTGGATTGATTATGGCGTTATC 192063 33 97.0 32 ................................T CAGACGGGGCAGAAATGCGTAAACGTCTATCT 191998 33 97.0 33 ................................G GGTTGACATACGTCGCGGTGCCCTTTACGGTAA 191932 33 100.0 35 ................................. AAAAAGAGAACCTGTATTGGGGTAGCACCGTTCAG 191864 33 100.0 32 ................................. TGGTCGCAACCATGCTGCGGGTCCACCAACAC 191799 33 100.0 32 ................................. CGTGAAACAAACCGCGACCGGGGAGCGCAGGC 191734 33 97.0 31 ................................G CTCAGACTATCATCAAGGTTGCATGCCTCCG 191670 33 100.0 33 ................................. TCGTCGCGGACATAGTCGAACAGGCACGTTTTA 191604 33 97.0 34 ................................G AGATTGAGGATTGTGGTGGTGCCACTCGTTACGC 191537 33 100.0 33 ................................. AAAACGGTTTCAGGCAGTCGGCGAACGATTTCA 191471 33 97.0 35 ................................C GGTATTCCGCTCGCCAAGATCACAAGCGGCGCGAA 191403 33 97.0 34 ................................G TATGAGGAGCATGACCCCCAGCCTAATCCGCCCG 191336 33 97.0 32 ................................T CCGCTGGTCTCGTACATGGTTTTGGCCACTGC 191271 33 97.0 33 ................................C TGAATCAGGCTCATAGCGCTCTGACTGCGCCCC 191205 33 100.0 34 ................................. ATCTGAGCAATGGCATCATGGGCGTGTTGGTCCG 191138 33 100.0 35 ................................. TCAAAAACAATGGTCCGCACCTTGGGGTATGCAAC 191070 33 97.0 33 ................................C GGCTTGCTCCATACGGTCACGCCCCGCTCGAAC 191004 33 97.0 34 ................................T CACTGCTCATTGTCTGCTCCTTTGCCGTTGATGG 190937 33 97.0 34 ................................T GAACCTCGCCCAGCAGGATTGCGTCGCCATGCGA 190870 33 97.0 33 ................................G ATAGGGGAGTGCTGCACGTGGGCGGCAACCTCG 190804 33 97.0 32 ................................T GCACGGTGCCGCTGGCACCCTTGAACAGGGTG 190739 33 100.0 32 ................................. TGGCGGAATGCGAACGCCTTTCCGGCGGTGTG 190674 33 97.0 34 ................................C ACAGACTACTGATGATCTGCGACCCGGCGCTTAC 190607 33 97.0 34 ................................C TCTCGCTGGCAAACAACCAATAGAAAGGATGATC 190540 33 100.0 33 ................................. ACGAGGAACCACGCGAGGAAGGCGAGACATTCG 190474 33 100.0 34 ................................. CCGTGGCGTGGACCGTGGCGGACGATACGGGCGT 190407 33 97.0 33 ................................T CGCGCCGGAATGGCATGGGGACATCAACACGCA 190341 33 97.0 34 ................................C GCGACGCGATGGCCGACGGGCAGATCACCGCGCA 190274 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 55 33 97.6 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGGTGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCA # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTACGGTCTATCTGCCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTCTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGGCCGTACGCGGCGGTCTTCAGGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCGCGCGTCACACCCTGCTCGGTGCCGAAGGTTTCCACGTTGACGGACACCGGATCGGCAACACCAATAGCGTAGGCGATCTGGATCTCAACCTTGTGGGCCAGACCGGCGGCCACGATGTTCTTGGCAACCCAGCGAGTCGCGTATGCGGCAGAACGGTCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCGCCACCATGAT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //