Array 1 178808-180300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXU010000023.1 Erwinia amylovora strain 1486 Ea_1486_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178808 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 178869 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 178930 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 178991 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 179052 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 179113 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 179174 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 179235 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 179296 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 179357 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 179418 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 179479 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 179540 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 179601 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 179662 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 179723 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 179784 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 179845 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 179906 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 179967 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 180028 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 180089 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 180150 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 180211 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 180272 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : ATTACTGGTAGTAACTCAGCAGTATTCGGTACGTGTTCCCCGCGTGAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-4135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXU010000022.1 Erwinia amylovora strain 1486 Ea_1486_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 50 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 111 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 172 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 233 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 294 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 355 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 416 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 477 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 538 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 599 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 660 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 721 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 782 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 843 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 904 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 965 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 1026 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 1087 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 1148 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 1209 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 1270 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 1331 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 1392 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 1453 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 1514 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 1575 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 1636 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 1697 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 1758 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 1819 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 1880 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 1941 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 2002 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 2063 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 2124 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 2185 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 2246 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 2307 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 2368 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 2429 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 2490 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 2551 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 2612 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 2673 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 2734 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 2795 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 2856 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 2917 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 2978 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 3039 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 3100 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 3161 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 3222 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 3283 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 3344 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 3405 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 3466 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 3527 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 3588 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 3680 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 3741 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 3802 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 3863 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 3924 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 3985 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 4046 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 4107 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 67 29 99.4 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGGGCACCGCCAATCTTCTGGCCCCAGTGATTATG # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXU010000029.1 Erwinia amylovora strain 1486 Ea_1486_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 31644-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXU010000029.1 Erwinia amylovora strain 1486 Ea_1486_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31643 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 31582 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 31521 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 31460 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 31399 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 31338 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 31277 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 31216 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 31155 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 31094 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 31033 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 30972 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 30911 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 30850 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 30789 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 30728 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 30667 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30606 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30544 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30483 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30422 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30361 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30300 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30239 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 30178 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30117 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 30056 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29995 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29934 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29873 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29812 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29750 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29689 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29628 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29567 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29506 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 29445 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGNNGTGTTCCCCGCGTATGCGGGGATAAACCGGCGGCGAAGAGACCGGAGCATGGGCTGTTGAA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //