Array 1 87921-89625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGN010000002.1 Pseudomonas aeruginosa strain MET04 ctg_MET04_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87921 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 87981 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 88041 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 88101 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 88161 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 88221 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 88281 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 88341 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 88401 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 88461 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 88521 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 88581 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 88642 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 88702 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 88762 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 88822 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 88882 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 88942 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 89002 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 89062 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 89122 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 89178 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 89238 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 89298 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 89358 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 89418 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 89478 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 89538 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 89598 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 99669-98500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGN010000002.1 Pseudomonas aeruginosa strain MET04 ctg_MET04_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99668 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 99608 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 99548 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 99488 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 99428 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 99368 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 99308 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 99248 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 99188 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 99128 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 99068 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 99008 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 98948 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 98888 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 98828 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 98768 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 98708 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 98648 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 98588 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 98527 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 382211-382839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGN010000003.1 Pseudomonas aeruginosa strain MET04 ctg_MET04_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 382211 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 382271 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 382331 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 382391 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 382452 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 382512 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 382572 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 382632 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 382692 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 382752 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 382812 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //