Array 1 1-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQP01000111.1 Salmonella enterica strain CVM 43772 43772_contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 61 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 122 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 183 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 244 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107422-106068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQP01000029.1 Salmonella enterica strain CVM 43772 43772_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107421 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107360 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107299 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107238 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107177 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107116 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107055 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106994 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106933 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106872 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106811 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106749 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106646 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106585 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106524 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106463 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106402 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106341 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106280 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106219 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106158 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106097 29 96.6 0 A............................ | A [106070] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGCCAGTGGGCGTAGCCAGCTCATCGCTATTTTG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95643-96708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQP01000030.1 Salmonella enterica strain CVM 43772 43772_contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95643 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 95704 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 95765 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 95826 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 95887 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 95948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 96009 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 96070 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 96131 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 96192 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 96253 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96314 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 96375 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 96436 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 96497 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 96558 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 96619 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 96680 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //