Array 1 58690-57085 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1758 NODE_1_length_498132_cov_76.269665, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 58689 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58628 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 58567 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 58506 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 58445 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58383 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 58322 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 58255 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58194 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58133 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 58072 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 58011 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 57950 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 57889 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 57828 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 57766 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57663 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57602 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57541 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57480 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57419 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57358 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57297 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57236 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57175 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57114 29 96.6 0 A............................ | A [57087] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76742-74822 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAV01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1758 NODE_1_length_498132_cov_76.269665, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76741 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 76680 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 76619 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 76558 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 76497 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 76436 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 76375 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 76314 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 76253 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 76192 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 76131 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 76070 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 76009 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 75948 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75887 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75826 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75765 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75704 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 75643 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 75582 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 75521 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 75460 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 75399 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 75337 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 75276 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 75215 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 75154 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 75093 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 75032 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74971 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74910 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74849 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //