Array 1 2895901-2896723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031194.1 Streptomyces paludis strain GSSD-12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2895901 29 96.6 32 ............................T CTCGACAAGGCACTGTCGATCGGGAGCGCCAT 2895962 29 100.0 32 ............................. TTCGTCCGGCCGCCGGGCGGCAACATCAAGGG 2896023 29 100.0 32 ............................. AGCCCGGCCGCGATCCTGGCCCGCCTTCAGCG 2896084 29 96.6 32 ............................T CCTGTTAGCCCCACCAGGATCGCGTAGCAGGT 2896145 29 96.6 32 ............................G CCCCCGCCGCCCGCCGCTCCCGCCAAGCCGGT 2896206 29 96.6 32 ............................G TCGTCGGCGGCCGTTGTTCCGGTGGCGGCCGT 2896267 29 100.0 32 ............................. TCCGCGACCTGGTTGTCCGACGTGGACGGCGA 2896328 29 100.0 32 ............................. AGGTCGAAGGGGGACAAGGACCCCCAGGACTG 2896389 28 93.1 32 .....................-......T CAGGTCGCGATCACGAGCGGGACGTGGCGCTT 2896449 29 93.1 32 .....................A......G GACGTGAAGCCGGCGCCGTGGAGCTGCGCCGT 2896510 29 93.1 32 C...........................G GTTCTGTGGGCGCTGGTCCTGCGTCAGTTCTC 2896571 29 96.6 32 ..............G.............. AGCCAGGCCAGCAGGACCGCAGTGGTCTCGGA 2896632 29 82.8 32 .G.T.........C.......A......G GAGTGGGGCGAGATGGTCACTCTTGGGGTGGC 2896693 29 82.8 0 A..T........T.........C.....G | C,G [2896717,2896719] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.8 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGGCGGCGAGGGCGGGGCGAGGCGAGGGCGGGGCGCGATTGGGCTGGCGGGTCGTGGGTCGTGAGTGGCGGGTGATGCCGTGACGCCCACCGCGACGCCGCAAATGGTCACAGCGGATCACCCGCTTGTCATCAGCCCACATCCGCACTGTCCGAAACCCCACTGCGGCTGCGCGAGGGGCCCTAGGCAAGGCCCATCGATCACATGCGCCTTTACGCGAAGGCAACATCGGCTCCCACGAACCCCTTTGGCCGCTTTCTTCACCGGGGGTGGGGGCGGCAGGCAACGGCCGGGGCGCCCAGCGCACCAACGGACGCGCGAGGCACGCGCTCGGCAGCAGACGGCGAGTTGGCCGGACGCCCACCTTGGGCGGGGCGGGTCTGCGAGACTGGGGGCGGTTGTTTGGAGCTGGAGAGCGAGGGGATTTGAGCCGATTGCCGGAGTCACTGCTTGTGAAGAATTTCGGCCCCAGCGCCAAATAAAGCCCCAGCTCACGAAGG # Right flank : GTTGCGGCCGGCTACGGGCGCGTTCGCGCAGCCGTACCGGCCGCAGCGGGCGGCGAGGGGTCGCCCGCGACCGTACAGCCTAGGGCGCGGGGGCCGGCGCGCCCCAGGGCTGAGGCCCGCCGCCCCCGGCGGCGGCCGCCCGTGCCACGGCCCGCCGGTCCATGGTCATCGCGTGGTCCCAGATCGCGTCGTGCAGTGCCTGTACGCACGGGCCGCAGACCGTGAACGGCGCCGCGACTCCCCCGGCCGTCTGCGCCGTTCCCAGCCAGAGCACGGGCGTGTGCACCTGGCCGCACCAGAGCCAGCAACGGCCGTAGGACCACTCGTTGCCGTCGTCCGTACGGGCCGGCTCGGGCCGGTTCGCGTTCAGGCGGAGGGCGATGCCTGGGGCGACCCCCGTCACGGGCCCCCTCCCGGTGGTCACTTGCCCCACCGTCGGCCCGCGTTGGCGATCACCAGCCGCGCGCTCATCGCCTCGCGCTCCGACAACCGCGTCACCT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2899085-2899600 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031194.1 Streptomyces paludis strain GSSD-12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2899085 28 92.9 33 .G...........G.............. GCCCTTGCGTACAACTCGCATGCCCCACAGGTA 2899146 28 92.9 33 .G...........G.............. CCGCCGCCCGCAGCGCCTGCACGAGCGCACCTC 2899207 28 89.3 33 ..AT.........G.............. CACCCTTGCATGGGTTATTGGGATTCGCACATC 2899268 28 96.4 33 .............G.............. GTAGTCCTTCGACCACTCCTCGTTGTAGGACGG 2899329 28 100.0 33 ............................ GGATGACTGGTTGTGGTCAGAGTGGCTGAAGAA 2899390 28 100.0 33 ............................ GACTCAGCCGACCCGCGCCGGTGGCCGCTGCCC 2899451 28 100.0 33 ............................ CGCGTCGGCCGGCGCGGTCTGCCCGACCTCCCA 2899512 28 96.4 33 .............G.............. CCAGCTTCAGGACCTGAACGGCGGCGCAGCCGG 2899573 28 89.3 0 .............G.........A.C.. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.2 33 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : CAGACGGGAAATCTGCTGGACGATCCGGCGCTAGTAGCCCAATGCAGCCTGGACTACGATCTCATTCGGGCCTCCGCCCTTTCGCCTGAGCGGTCCTTGGCCCTGATCGAGTTGGCGGCGGAGGAATTCGAGCATGAGCGTTGACCACGGCCTGAACGCAGTGGCGTGGCGCAAGAGCAGCTACAGCAACGGGCAGAGTGGCGACTGCGTCGAAGTGGCGGACGGCTTCCCCGACGTCGTCCCTGTACGGGACAGCAAGGCCCCCACCCACCCCGCCCTGTGTTTCCCCGCGCCGGCATGGTCAGCCTTCGTCCGACACCTCAAGGCCCAGGCGTTGTAGGCCACTCTGAGTGCAGAGGTCGCGAGATGCCTTGCTGCTCGTTTCACAGGTCGGCGCGTGCACGACAGGCCCCACAAAGGGAGGCTTCACCGTAATGCCCAAGTTGCCGCTAGTGACAAAAATCCGCCCCACCCGAGGATAAACCCGCAGGTCACGAAGG # Right flank : CCGTGGTCAGCTCGCGGCGATCGTGTCGTTCATTCGGCCGAACGTCGTGCACGCGCAGTACTGGACGCCCTACGGGGAGCCGCTCGGAAATCCTGGAAGTCCGCTTTATGTGATGGCCAAGGAGAACAATGACTGGCGGCTTGTCGCCTGCCAGAACACGGAGATCCTTGACTCGTAGCCCGTCCGCACGCCCAGGGGGGAGCGTCGCCTCCGTGGTGTTGTCGGGTGCGGGTCAGAGCGGGACTCTGTCGGGGGTGGGCCGGTGGCAGGGGTTGTTGGACGTGGGGCCGCCCCTCCAGCTGTGAGTGTCGCGTCTCCGGCGGAGGAGTAAAGGGCGCTCCTACGTCGCGTCGGCTGCGCCGACTCCGCTGCGCTCCGCCCTTGACACCTCCCCCGGAGCCGCAAGTGCAGGTGCGGGAGGGGCGGCCGGGGGGAAGGGGGGCCCAGGAGGTCCGCTGTCCTGCCACTCGGCTCAGGGGCTGACAGCCCGGTGGGCCCTG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2920666-2920088 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031194.1 Streptomyces paludis strain GSSD-12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2920665 29 100.0 32 ............................. ACTTGTGCAGCACGACGACGGGTACCCCGCTG 2920604 29 100.0 32 ............................. CTGGACTTGTCCCATGCGGTCAGGAAGACGCC 2920543 29 100.0 32 ............................. ACCGTGGCGGGCGCCCAGGGCAGCGGGGTTTC 2920482 29 100.0 32 ............................. ACGGCGACTTTCATGCGGAAGTGGTCGGCGGT 2920421 29 100.0 32 ............................. GCCACGGCTCCTGTGCTCTCAGGCGACTTCAT 2920360 29 100.0 32 ............................. TACTTGAAGAACCCTTCGATCTTCGGGGTGGT 2920299 29 100.0 32 ............................. GCGATGCCCCGCCACGGGATCGAAACCGCATC 2920238 29 100.0 32 ............................. CCGCGGTAGGTCGTGCTCTTGACCTTCCGCCC 2920177 29 89.7 32 ..............A......A......C GAGGCCGGAGCTGGCGAGCGCGCGCCGGGCCA 2920116 29 89.7 0 ...T.....................CT.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGCTCCCCGCGCAGGCGGGGGTGAACCG # Left flank : TGAGGTGGTAGGCCCTTACCGGAAGTCGTCCTACTCGGGCCACAACAACGACTGCGTCGAGGTAGCTCCCACGGCCAATGGCTGTGCCATACGCGACAGCAAGGACCACGCCCGACAGCCTCTCGGCTTCGCCCGTGCCCAGTGGCAGATCTTCCTGACGCACACGAAGGCGGATACCTCGTGACCTCCGAGGCCGTAGGTCCGTACCGGAAGTCCTCCTATTCCGGGCAGCAGGGCAACTGCGTTGAAGTAGCCATCACGGACGATGGCGGCTGCGCCGTACGTGACAGCAAGGACCAGGCCCGGCGGCCTCTTGGCTTCGCCCGTGCTCAGTGGCAGATCTTCTTGGCGCACGCCAAGTCAGAAGCCTGTTGAGCCTTAAGGCCGTAGGCCCTGACCGGGAGTTGTCCTGCCCGGGCCAGGACGACAACTGCGTCGATGTGGTTCGGCATTGTGGTCAAGAGCGAGCAAAGCGTCTCTGAAGCCGCAGGTCAGAAAGT # Right flank : AAGCCCACTGTGGGGACCGTGATCAGTGCGTCGGCGCCGTCGACCGGCGTGGCCTGGCGTGACGCCCCGCCGGCCGGCGCATACGGCGTCGCGGTGGAAGTTTTCCTCGGTGATCTCGGGGCGGCGGCGCAGGGTGAACAGCGCTTCGCATTCGGTGCCGTTGGCGATCACGCGCATCGGGTGGACTCCGCGGCCCCATTGTTCATCGATCTTCTCGATGGAGTTCCCCAGGCCCTGCGCCCACTTGGGCAAGTGGGCGGGGTTTGACGCGCAGGCGTAGAGCGTCGTCCTTAAACGGTCCGTGAATGGTCAACGCTGAGCGTGGGAGCCGGACGGTGTCGGTCGTCTCGGCGGCACTTTGTACCGGTGGGTCGACTCCGTGGGCCCGTCCGGGTCCCCGCCTGCTCGGACCGCTCAGATCGCCCGGCTATTCGGGCATATGGGATGTCATAAGGGCTAGGCGGTCAAACGTTCAACTTCGGGTGTTGATGCATATACGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2934575-2933997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031194.1 Streptomyces paludis strain GSSD-12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2934574 29 100.0 32 ............................. TCGGGAATCAAGCCGGTCTTCGGAACACTGAA 2934513 29 100.0 32 ............................. TGCGGCGCTGGCGCGCGATGATCGAGGCGGAT 2934452 29 100.0 32 ............................. GGGAAGTCGGTCAGCGTGGCCTGCCAGGTGCC 2934391 29 96.6 32 ......................C...... GTTCGCGGCTACCTCACCCGGCCGCGCTGCCT 2934330 29 96.6 32 ............T................ CTCGCCCGCCGCTGGCTCGACGGGTGGACCGA 2934269 29 96.6 32 ............T................ TACTTTGTGGGCCGGCAGGTCGGCTGGTGGGT 2934208 29 96.6 32 .................A........... GGCGACGGCTGCGTCCTGTTCGCCGGGCACGT 2934147 29 96.6 32 ................T............ TCGCCCTTGACATCCCCGGCGATCAGCGTGCG 2934086 29 82.8 31 T....T......T.......A.......G GCCGGGCCGCGAGGCCGTGCGTCGGGACAGC 2934026 29 86.2 0 .C..........T..........A....G | T [2934020] ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.2 32 GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GAAGCGGGAGCTGACGGTCCCGACCGTCGGCCAGACGGTCATCCTCACGCGCGTCGCCCAGCAGGCCACGCCCATGCCGGCGGGCGAGGACCTGGCCACGCTCGGCCGCAGCGGCGCGCTGCTGGTGCTGCACCTGGCGGCGCGCTACGCGGACCGCGTCGTCGCCGAACTCCTCCCGCACTACGGCCCCGACTGCCCGGCCGCGGTCGTCGCGATGGCCTCCCGCCCCGACGAACTTGTCCTCCGCGGCACCCTCGCCGACATCGCGGACCGCATCCGCGAGGCCGGCGTGGTCCGCACGGCGGTCATCCTGGTGGGCCGCACGCTGGGCGCGGAACAGTTCCGCGACAGCCACCTTTACTCGACGACGCGGGACCGGGGGATGGGGCCGGGGGACGACCACGCGTGCTGAGGAATGCCCTGTCGCGGGCGGAATGCCGGTTTCGGTGAAACTGGGCGTGGGGGGTGTTGGCGGGGCGTAGGGTCGCGGGTCGGGCAGC # Right flank : AGGCGTGCGAGGTCGGCCAGGTTGTTCCAGCGGTGCTCCCCCGCGCACGCGGGGCACGCGGGGCACGGTGCCGGTCAGGAGCGGCCCACCACCGTGCCTGCTCTGTCGATGCAGATCACGTCGACCTCCACCGGCGCTTCCCGTAGGACTGCTTGGGCTTCGGTGCGGGCTCGTGCTGCGACTGTGTTGCCCAGGGGGATGCCCTGTGATTCGCAGAGGCGCAGGGCCTCCAGGCCCGTGTTGGCTGTGGTTATTTGGGCTGCCAGGGATGGGGGCGCGCCGGCCTCGGTGGCCAGGGTGGCCAGGAAGTCCTTGTTGACCTGGGAGCGGGCCGAGTGGAGGTCCAGGTGGCCGGCTGCCAGTTTGGAGAGTTTGGCGAAGCCGCCGCAGATGGTGAGGCGGTCCACCGGGTGGCGGCGGAGGTACTTGAGGACCGCGCCCGCGAAGTCGCCCATGTCCAGGAGCGCGTCCTCGGGGAGGGCGTAGGTCGCCAGGACCGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGTGTGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 5014553-5014280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031194.1 Streptomyces paludis strain GSSD-12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5014552 29 100.0 32 ............................. ACGTGGAGTACGGCGGTCAGGGCAGCGAGGCT 5014491 29 100.0 32 ............................. CGTCCGCCGCATCGAGCTGGCGCAGACGTCCC 5014430 29 100.0 32 ............................. TGCACGCCGAACAGGGCGCCGCGTTCGTCTCC 5014369 29 100.0 32 ............................. GCCAGCGCGATGGCGTGACGGTGGAACGCGAG 5014308 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CCGCTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : TGTGCGCCAGCATCTCCCTGTTCGTGAAGCGCAACGCGCCATCCAAGTCACGGCGCTTGCTGTCACCGAAGGCAACGCCCCCGGCTATCGGCATGATCTGGACGCAGGCATCCCCGGAGCCGTTGCTGAACGAGGACTTCTCCCACTCACCGTCAAGCGGCGCGGCGTAGAGGTCGTCTTTCGGATCACTCATGACCGCTCCTTCTCAATCCCTTTGATGCGTCGAATGTTTTCTTCCCCGCCCAGCGCAAAATCCGCCGGGTCAGTCTCCTGACTAAACGCGGCGATGGCCGTGATGTACTCGCGGGTCTGCAAGAGCCCCGGCACATAGCCACGGGCCGCCTTCGGCGGGGGTGTGGGCCAGCCGGTACCGTGCCGGAGCGCGGGACGCCCCGAGGCACATACCCCTGCCGCCAAAGCCCGTTATGGCCGATCCGCCGGATTCAACGAAACTGCTGCAAAACCCTGCACCCCTGCCATAAACTCCCAGCTCACGAAGT # Right flank : CGTAAATGGCCGGTCTGAGAGCGGCTGCTCGCCTACTCCCCGCGCCTTTGGGGACCCTCAAAGTTCCGTCCCGTCCGGGATCAAGTGGTCGTACTGACCCGCCTTGACCGCCAGGATGTGCGCCAGCATCTCCCCGTCCGTAAAGCGCAACGCACCATCCAGATCCCGGCGCTTGCTGTCACCGAAGGCAACACCCCCGGCTATCGGCATGATCTGGACACAGTTGTCGCCGTTCATGGCGCTGAACGAAGACTTCTCCCACTCGCCGTCCAGCGGCGCGGCGTAGAGGTCGTCTTTCGGGTTGCTCACAGGAGTTCCTTCTCGATCTCTTCGATGCATCGAATGGTTGCCTCCTCATCCAACGCGTAGGACGTTGAGTCAGCGAACCTCCGGCGGGCCCGCCGCACCTCTGCCGGATCGTCCTGGAGGGTCTCGCCGGTTACCCGCTCCTGTAGAAGGACACTGCGATTGTCGGCGCCCGGGAAGTCAACGATGGTGAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 5015623-5015168 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031194.1 Streptomyces paludis strain GSSD-12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5015622 29 100.0 32 ............................. GGAACGGCCATCAAGGCCCTCCGGCAGGTTCA 5015561 29 100.0 32 ............................. CACCAGACGAAGAACGGATTCATCACCGTGAG 5015500 29 100.0 32 ............................. CTGCTTGCCCATCACGCCGCAGCCTTGGCGTG 5015439 29 100.0 32 ............................. CTGCTTGCCCATCACGCCGCAGCCTTGGCGTG 5015378 29 100.0 32 ............................. GTCTCCCATTCCTGGGACGGGCCGCGCGCCCG 5015317 29 100.0 32 ............................. AACAAGGGCGGTGTGGGGAAGACGTCGGTGGC 5015256 28 89.7 32 ........-...........AT....... GAAATGCCTGACGGTGTAACAGCCCGCGCATA 5015196 29 93.1 0 ................T....A....... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 CTGCTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : GCGGTGGTGCCGGTGGCAAACGCGACGGAGCTGGCGTCGGCGCGCGAGCGAGGCGAGGCCGTCCTGACGGCGCTGAAGCGAGACGTGGCGGAGGCGGCGGGCATCTGACGGGGGTCGCCTCCGGCGAGGGCGGCGGGTCGCCTCCGGCGGGGGGCGCGGGCCAGCCGGTCCCATGCCGGGGTACGGGTCGCCTCCGGCGGGGTCCGCCTTTGCGCGGGTGGTACGGCCTGATGCCGGGGCGCGGGGCCTCCGGAGGCACATGCCCGGACTGCATGATTTACGCCGCGTGCGGACCGGAACGTACGCGCGGGTATCGCTCAGCGGCACAAATCACGCTCTACGTCCGGACACGCACCTCCTACGACCCCACCCCCCTCCCGCCGGTGGTGACACCACGTCACAAACCCCTGCCGCCAACGCCCGTTATGGCCGATCCGCCGGATTCAACGAAACCGCCCCAAACCCCCGCACCCCTGCCATAAACTCCCAGGTCACGAAGT # Right flank : GCCGGTCTCGGGGCCAAGCGCGCGATCAATCACTGCTCCCCGCACCTGCGGGGACCTCAGAGTTCCGTCCCGTCCGGGATCAGGTGGTCGTACTGGCCCGCCTTGACCGCCAGGATGTGCGCCAGCATCTCCCTGTTCGTGAAGCGCAACGCGCCATCCAAGTCACGGCGCTTGCTGTCACCGAAGGCAACGCCCCCGGCTATCGGCATGATCTGGACGCAGGCATCCCCGGAGCCGTTGCTGAACGAGGACTTCTCCCACTCACCGTCAAGCGGCGCGGCGTAGAGGTCGTCTTTCGGATCACTCATGACCGCTCCTTCTCAATCCCTTTGATGCGTCGAATGTTTTCTTCCCCGCCCAGCGCAAAATCCGCCGGGTCAGTCTCCTGACTAAACGCGGCGATGGCCGTGATGTACTCGCGGGTCTGCAAGAGCCCCGGCACATAGCCACGGGCCGCCTTCGGCGGGGGTGTGGGCCAGCCGGTACCGTGCCGGAGCGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //