Array 1 33817-31957 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKR01000036.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N48696 N48696_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33816 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 33755 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 33694 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 33633 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 33572 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 33511 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 33450 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 33389 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 33328 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 33267 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 33206 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 33145 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 33084 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 33023 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 32962 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 32901 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 32840 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 32779 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 32718 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 32657 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 32596 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 32535 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 32474 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 32413 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 32352 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 32291 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 32230 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 32169 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 32108 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 32047 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 31986 29 96.6 0 A............................ | A [31959] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51090-50085 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHKR01000036.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N48696 N48696_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51089 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 51028 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 50967 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 50906 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 50845 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 50784 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 50723 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 50662 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 50601 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 50540 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 50479 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 50418 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 50357 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 50296 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 50235 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 50173 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50112 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //