Array 1 109716-107976 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHND01000010.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51265 N51265_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109715 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 109654 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 109593 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 109532 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 109471 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 109410 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 109349 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 109288 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 109227 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 109166 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 109105 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 109044 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 108983 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 108922 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 108861 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 108800 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 108739 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 108678 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 108616 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 108554 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 108493 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108432 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108371 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108310 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 108249 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108188 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 108127 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 108066 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108005 29 100.0 0 ............................. | A [107978] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128255-126397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHND01000010.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N51265 N51265_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128254 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 128193 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 128132 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 128071 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 128010 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 127949 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 127888 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 127827 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 127766 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 127705 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 127644 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 127583 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 127522 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 127461 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 127400 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 127339 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 127278 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 127217 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 127156 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 127095 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 127034 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 126973 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 126912 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 126851 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 126790 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 126729 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 126668 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 126607 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 126546 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 126485 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 126424 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //