Array 1 8267-20095 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRLZ01000002.1 Campylobacter hyointestinalis strain D1932 NODE_8_length_86092_cov_45.9586_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8267 30 100.0 35 .............................. AATATACCTTTATAGCGCTCTCTCCGCCTATTTGA 8332 30 100.0 33 .............................. AGATATCTATGCAAACCATAGGGGGATTTTAAC 8395 30 100.0 34 .............................. AGCAAGAGATAGATGAAGCGTGGGCGAGGCTTAG 8459 30 100.0 38 .............................. CAAAAATACATAAAGCCCATAGGGTAAGCATAATAAAA 8527 30 100.0 35 .............................. CGTAGCATTTCAGCCAAAGGAATGAAAGCAGTGCA 8592 30 100.0 36 .............................. CATAATTATCCAGCCACGGTGTTGATGAAACCTTAA 8658 30 100.0 34 .............................. TCCTTAGTTTTGATTTTGTGTAGGGCTTGAAAAG 8722 30 100.0 34 .............................. TCCTTAGTTTTGATTTTGTGTAGGGCTTGAAAAG 8786 30 100.0 36 .............................. CCTTGAAATGTGGCAGTATGCGTTTGATTACTACTG 8852 30 100.0 36 .............................. TGTTTGCCAATGTTAAAACTCTCTGTCGGTCTATGA 8918 30 100.0 37 .............................. ACAGAGGTAAAAAGAGACGACGAGGCTATTCAAAAGC 8985 30 100.0 36 .............................. CAAAGATAAACAAAACCAAATCTACGCTTATGATGA 9051 30 100.0 39 .............................. GGGCTAGTATATACTTTGGCTTTATATCGAAAAATATCG 9120 30 100.0 35 .............................. CGGCAAACAAAAATGCATAGTAGCCTACGACTCTA 9185 30 100.0 33 .............................. TTATTACACTTTCAAGCTCATCAGCAAGGTTAA 9248 30 100.0 35 .............................. TATATGATGCTCTTTTTATTTGCACCACTCTTTAC 9313 30 100.0 34 .............................. TGAATATACCAAAGGGCTTTCAAACAAACGGGGC 9377 30 100.0 37 .............................. CATTTTTTACCCTAAGATATTTTTTCGCAAAACTCTA 9444 30 100.0 36 .............................. TACACCTGTTATTGCTGAGCTTCCTATAATGGACTT 9510 30 100.0 34 .............................. GCTAGCTTATTTTCTACAAAGACGCTCATTTTGG 9574 30 100.0 36 .............................. AATAAAGCGTTACTTTTCTAGCATATCAATCAAAAA 9640 30 100.0 35 .............................. TTTAGAATGCGTCTGTGCAGAGAATAGCATAACGC 9705 30 100.0 37 .............................. CAAGCCTTTTATTGTATATTTCATATTTTTCTTCGGA 9772 30 100.0 35 .............................. GTTATGCTTGAAACAATACCCGGAAGCCAATTTTG 9837 30 100.0 34 .............................. AAAGCCAAACCACGTTTTTAAGGCTATTTAAACA 9901 30 100.0 37 .............................. GAATTATTCGGTTCTTTTGGTTTTGAAGCAATAGAGC 9968 30 100.0 34 .............................. TTAGGGTATTTGTTAGCTCGTCTGTTTTAGTGTT 10032 30 100.0 36 .............................. CAAACCAAAGGTCACTCCACTACCAACAAAAACACC 10098 30 100.0 36 .............................. TCAACGCCGACAAAAAACATAGGGTCGCCATACTTA 10164 30 100.0 36 .............................. TCATACAAAAAACAACTCATCTAAATTTAAAAAGAA 10230 30 100.0 36 .............................. TCAAAAAAGGAATGAGCGTAGCGGAATTTTTAAATT 10296 30 100.0 34 .............................. TGCCTGTTATATCATTAGCAAAACTTATATTTGA 10360 30 100.0 34 .............................. ACTGGGTGCTTAGTAGATATGACCTGAATGAGTT 10424 30 100.0 36 .............................. TAATTCCAAAATAGAGAGCCTATATCCACAAGCTAG 10490 30 100.0 35 .............................. AAAGATAGATTTGAGCTAGTAGAAGAATACAGGTA 10555 30 100.0 34 .............................. TACGAGAACGAGGAGCTATTAGTAGGAGAGATGA 10619 30 100.0 35 .............................. GACCCAGCCAAATAAACAACGATAGAACTCTCAGA 10684 30 100.0 37 .............................. AAAGTTTCAATGCTCATTTTTAATCCTTTTTTGATAA 10751 30 100.0 34 .............................. TTAATTGATGATTTTTATTTTCTTTGTGAAATCT 10815 30 100.0 34 .............................. TTTTGCTGATTTGTTAGACTTCCCCTTGAACTTC 10879 30 100.0 35 .............................. CTATGGGATAATTCTATAAGCCCGATGTTACTTGA 10944 30 100.0 35 .............................. CTTTTGGTTATGGAGAAAAAGAGGGAAAAGAGGTT 11009 30 100.0 35 .............................. ATGGAAATGTTAGATAATAAAAACGTCACAACAAA 11074 30 100.0 35 .............................. ATTTCTATTTTGTAGGTCATATGTGATTTTTGATA 11139 30 100.0 37 .............................. GCAAGATAGATAGCTTAAATGATGAGCTTAAAGCGTA 11206 30 100.0 35 .............................. AGCGGTTGGGAGCATTTTCAATTTTCTAGCTTTGA 11271 30 100.0 35 .............................. GAAATCATCAAAACAACGCAAGATGAGTTCAAGAT 11336 30 100.0 36 .............................. ATAGCACTGTCTAAGCCGTTCATTTTAGATTTTAAG 11402 30 100.0 35 .............................. TTATTTCAAATTTAGCCGATTTTTATTTGATAGTG 11467 30 100.0 36 .............................. GATACTGTCTTGAATTTCACGTGTGCAAAGTATCCT 11533 30 100.0 34 .............................. TCCTTAGTTTTGATTTTGTGTAGGGCTTGAAAAG 11597 30 100.0 34 .............................. AAATGCTTGAAAGGCTTAATACAATTTTGGAAGA 11661 30 100.0 34 .............................. GTTTCAATGCTCATTTTTAATCCTTTTTTGATAA 11725 30 100.0 35 .............................. ATTCGGCGGATACCAATACAGAAGTTGCGAGGACA 11790 30 100.0 34 .............................. AAAAATCACGCTAGGCTTAACTTCAGCGTTATAG 11854 30 100.0 36 .............................. CAATGGCGATAGAAATGCGATAGAAACAAGAGCCAA 11920 30 100.0 34 .............................. CTAAATAGACCAAAAGAGCCAAGCCTTGATGAGC 11984 30 100.0 35 .............................. TTAGCAGGTATGCCTATCATTCCTTTATCGATGAT 12049 30 100.0 34 .............................. GATGAGTTTCTTATATCGTTGTTATCAAAAAAAT 12113 30 100.0 35 .............................. GTCAGCTCCAACCATATGCAAAATATTACCATTTA 12178 30 100.0 35 .............................. CTTGCGCGACTAGAAATGAAAAAATCACCAAAACC 12243 30 100.0 34 .............................. GTTGTGTATCAGTTTTTAAATTATTTTTCAAAGG 12307 30 100.0 34 .............................. TAATATTTATCCGCTATTAGAATTTTAGCGTAAT 12371 30 100.0 33 .............................. TCTATCGCCGATGATGACTAGCTCATCATTTAA 12434 30 100.0 36 .............................. TAAAATAAATAATAATTTAGTCGAGCTTAGCTATTT 12500 30 100.0 36 .............................. ATCACGAAAGAGCGTTAGAGAGAAATTATTCACAAT 12566 30 100.0 36 .............................. ATTCCGTTTATAGAGGGGTTTATTTCACTCCTTAGA 12632 30 100.0 34 .............................. ATTACCAGTCAGGCGCGTATTTTGTTATCAAGCC 12696 30 100.0 36 .............................. CGTTTCAGATGCAAGCAGCATAAACATCAAAGTTGA 12762 30 100.0 37 .............................. ATCTATGGGCGGATTAACACTTATAGCACTGAAATTT 12829 30 100.0 35 .............................. GCTTTTGAGCTTAATAGTGATTGAGTTTCAATAGT 12894 30 100.0 36 .............................. TGTATCGTGCTATCCCTTTGCAAAATAGCCGATACA 12960 30 100.0 37 .............................. GTAATACAATTGGCGAGTTTTGGGATGATAGCGTTCG 13027 30 100.0 37 .............................. GTTTAGCTCTTTTAAACAAAGTTCAGCTAAACACTCA 13094 30 100.0 34 .............................. GATTTTGTGGGCGGCGTGGCAGAAGATGCAACGA 13158 30 100.0 34 .............................. CCATCCAGGTTGCTTTGCTCAACTTCCATTAAAC 13222 30 100.0 35 .............................. CAATAGGGCTTATTCCATATCCTCCGCCAAAGCTA 13287 30 100.0 38 .............................. GTAAAGCCCTCCGTTTTGATAGGATTGTTCGCATATGC 13355 30 100.0 33 .............................. ATATATGGGAAGTTCAATCGGTGCAGATGAACC 13418 30 100.0 34 .............................. TCAAAAACAGCTCTTGAAATTCAACAAGATATCG 13482 30 100.0 36 .............................. AGGTGGTAGGCGATATAAAAAAATCGATAGTAGCAG 13548 30 100.0 34 .............................. TTTAGCTTTTTTCACACTCTTCTATCAAAAAATC 13612 30 100.0 36 .............................. TATCGGCGAAATTAGAAAAATGTATTTTAAGAATTT 13678 30 100.0 35 .............................. TTTTATCATTTATTATTCTTGCGTATTTTTCCATT 13743 30 100.0 34 .............................. GTGAAAATAGTCTGGGCATCGAAACTTTGGTAGG 13807 30 100.0 37 .............................. AGCAGATATCCACTCCCTCGAATGATTTTATTTTTGA 13874 30 100.0 34 .............................. CTATACTTACTTTTGTCATCTTTGTATTTTTTTC 13938 30 100.0 37 .............................. TTAGCTCTCTATCAAACACAAAATACAGAAATTGTGA 14005 30 100.0 33 .............................. GCGGAAGTATATCAATGACAATCAAGAGAGAAT 14068 30 100.0 35 .............................. TAAAATGACAAAACAAGACTTTCAAGAAGTATTTA 14133 30 100.0 35 .............................. CAAAACGATATTTTAGAAATATCACAAGGGAGTTA 14198 30 100.0 37 .............................. TTTTTGATGATACCTCATCAGCTTTTTTAAAACTTTC 14265 30 100.0 35 .............................. GAGGTATGCCCCCTTTGTGGCGTTAAGTTGATAAA 14330 30 100.0 35 .............................. ACAGATAAAATAGCACTTGTGGATTATGAAAAGGC 14395 30 100.0 34 .............................. TTTATTTGAGGTTGTCCTCTTTGTTTTGATAGAG 14459 30 100.0 34 .............................. TCGATATATTTACGCTTTTATTTAAGCAGGTGGT 14523 30 100.0 34 .............................. TTATTCAGATAACGACACAATACCATTTTAAGGA 14587 30 100.0 35 .............................. GGTATCATCAAAAAGAGATTTAACAGTGCAAAAAA 14652 30 100.0 35 .............................. AAGTTTTTCTTTGGATAGTTGAGGTTCATTAGTTA 14717 30 100.0 37 .............................. TGGTTGAAGCACTTGGCGGTTGGGTGGATATTTGCAA 14784 30 100.0 35 .............................. GGCAAGTTTGAACCAAAAACGCCTATGACGATGCT 14849 30 100.0 34 .............................. ATGATATAAAAACTCTTATCAAGCTTTTAGGTTA 14913 30 100.0 34 .............................. GAAGTAAAAAGAGACGACGAGGCTATTCAAAAGC 14977 30 100.0 35 .............................. AATGTCAGAAAGACCGATATTGCGCAAGTAAATAG 15042 30 100.0 34 .............................. TTAATATCGCTCATCTTTATATCCAAAGCGGAAT 15106 30 100.0 36 .............................. ACAATAGGGCTTATTCCATAGCCTCCGCCAAAGCTA 15172 30 100.0 35 .............................. ATATTTTCAACTTGCAAGCCGTTTTTTAAATCATT 15237 30 100.0 39 .............................. TATGACCCCTTTGCTTGATAGGCATTATCAATTATTAAT 15306 30 100.0 35 .............................. TCTTAAGCCACTTGCTATCTTGCTTTGAAATCCTT 15371 30 100.0 35 .............................. TTCACTATTTGGCTTTCTGATTGTAGGGTCAAGGA 15436 30 100.0 35 .............................. ACTATATCAGATTTTTTTATATTAACAATACGTAT 15501 30 100.0 39 .............................. GATAGTTTCCCAGCCTAGCACTTGTGATACTATTGTATT 15570 30 100.0 35 .............................. GCCTACGATTTTGAAGCCTTTTTGTTCGCAGTATT 15635 30 100.0 34 .............................. TCTCCTGCATTTTCTCATATACTTCTTTAGTTGG 15699 30 100.0 33 .............................. TGAGGACGGCATCGAGTTTATCCGCGGTTTTGA 15762 30 100.0 34 .............................. CGCAGTAAAATCTTAACTTAACACATTCAAAACT 15826 30 100.0 35 .............................. TTCCACCACTGCGTTTATAGTCTTATCTTCAAAGC 15891 30 100.0 34 .............................. TCAAAAAGTTCTGATATTTTGATTTCATTTATCA 15955 30 100.0 36 .............................. TTGTTTCAGGGAGGAAAATTCACAAATCTCATCTTA 16021 30 100.0 34 .............................. CGAATTACTAGCGTAAGCATTTATCCCTAAATTA 16085 30 100.0 34 .............................. TCCTTAGTTTTGATTTTGTGTAGGGCTTGAAAAA 16149 30 100.0 35 .............................. CGATAGAAACGGCATTTTATGGGTAGATTATACCA 16214 30 100.0 34 .............................. AAGAAAAAGAGCAAGATAGCATAGACTTTGATAA 16278 30 100.0 35 .............................. CCAATATTGCTTTTATTTTTTTCTTATTCATATTG 16343 30 100.0 36 .............................. TAGAGGGTACAAAGTAGATACGAGCTCCCCTCAAAA 16409 30 100.0 33 .............................. TGAATAAAAACTCGCTTCCATTCACGTGCTTAA 16472 30 100.0 36 .............................. AATGTTTCATTTATCTTCATTGTTTATCATTTCATT 16538 30 100.0 35 .............................. CTAAGAGTATTTTTTAAAATATAGATATATATTTT 16603 30 100.0 35 .............................. ATGGAAAAACTCTTAAACGACTTAAGAGATGTCCT 16668 30 100.0 36 .............................. TGAAGCTGAAATGACTGAAAGTGAAAAAATAGAAGC 16734 30 100.0 35 .............................. GTTGGCGGATTAGCACCACTTCCTACGAAAATGCA 16799 30 100.0 34 .............................. TCTCTAGCATAGTGCCTTTTTCGCCTATAAGAAC 16863 30 100.0 36 .............................. AATCTCAATGGATGCTACCTACCGAAGCAGAATATT 16929 30 100.0 35 .............................. ACCCCTTTACTTGATAGGCATTATCAGCTATTGAT 16994 30 100.0 34 .............................. GCAGATTGGGGCTTTGCAAACGACCCTAACACGC 17058 30 100.0 36 .............................. AGATAGCAAAAATGATATAAATAGCCCTTGCGAAAA 17124 30 100.0 35 .............................. CAATCATTATTAAGCTCAAAAGCTCCAAAGAAAGT 17189 30 100.0 35 .............................. TGGGACGAAGATATCAAGCAAGGCGTTTTAAGCGG 17254 30 100.0 37 .............................. GCTACACTTCGCGGATATTTAGCAGGTGCGAAAAAAG 17321 30 100.0 35 .............................. TTCAAAACAATCAGTCTCACAAAGCCTAAAAAAAC 17386 30 100.0 35 .............................. TTTAGAGGGTGGGAATAGTGCGTTTGGTGAGTTTT 17451 30 100.0 36 .............................. GGTTACTTTAGGCACACAGTTCTATTGTTCTGCGAA 17517 30 100.0 39 .............................. ACACACTCATACTCATCATTCAGAATTTCACAAAGAAAA 17586 30 100.0 36 .............................. ACGGAAGCACAAAAATAGCAATGGAAAAAGGAAAAA 17652 30 100.0 34 .............................. TTTAATAATCCATATGTTTTATTATTACCATTAT 17716 30 100.0 37 .............................. ATGTTTGCGTAGATGGCGGAACAGATGAAGAGATAGC 17783 30 100.0 34 .............................. TGAGAAAATATAAAGTATCACTAGGCACGGTGAA 17847 30 100.0 37 .............................. TGGCTTCTTTAAAAAAAATCAATTCAAAACAAAAGGA 17914 30 100.0 34 .............................. TTGGCATCGCTGATAGTTGCATCGGCTTCCTTGA 17978 30 100.0 34 .............................. TTACATACCTTAAAAAACTTTTTTAGTTATTTTA 18042 30 100.0 38 .............................. GTGGTTACTTTAGGCACACAGTTTTATTGTTCTGCGAA 18110 30 100.0 38 .............................. TGATGGTAACACAAAAATAGCAATGGAAAAAGGGAAAA 18178 30 100.0 36 .............................. CCAAAAGATAGCCGATGAAATGTTTTGCTTTGGTTG 18244 30 100.0 35 .............................. TTAAAGCAGATTGATAGCAGTTTTTACAAATGGAG 18309 30 100.0 34 .............................. TTCCTTTTGCTAAATTTAAGGCTGGTTTTGAAGT 18373 30 100.0 35 .............................. ACTTTGTATCACAAGAGCAGAGCTATCAGAAATAT 18438 30 100.0 36 .............................. TATCAACCGATGATTATGTGAGTGTTTATCAATCTA 18504 30 100.0 34 .............................. AACAAATCAAAGATGAACAATAGAACAGCAAGAC 18568 30 100.0 36 .............................. GGTAATTCACGACTATCTATGCGATGAGGCTAAGAG 18634 30 100.0 35 .............................. AACGTGGATTTTAGGCTTTTTGACAACTCTACAAC 18699 30 100.0 34 .............................. GGTTTTAAAATTACTCTATTCATATCATACACGC 18763 30 100.0 33 .............................. TGCACAGACGCACTCTAAAAATGCGATATGCCT 18826 30 100.0 34 .............................. ACGGTAGGAATGCCTATCATTCCGCTACCTGCAC 18890 30 100.0 35 .............................. TAAAGACAAGAGAGTGGCCAAAGACGTAATTACTT 18955 30 100.0 36 .............................. CGACCAAAGCGGACTACTAGCAAGTGCGACGGTTGA 19021 30 100.0 37 .............................. TTTAGCCTATTGTTCATCTCTTATCCTTTATCAAATT 19088 30 100.0 35 .............................. ATCACAAAGCATAGGCGAGAGTTTAAGCTCTCAAC 19153 30 100.0 36 .............................. GAAAGGATTTAAAGATGAATGAGGAAATTGAGAAAT 19219 30 100.0 35 .............................. AGCAATATTCTAAATACCTCTCGAAGCAGTAGCAA 19284 30 100.0 34 .............................. CAAACGGCGGAAATTTCTATTTTGAAACTCAAAA 19348 30 100.0 35 .............................. TAAAGCCTTTGTAGCCGACCAAAAAATAGAAATTC 19413 30 100.0 35 .............................. CCTTTGCATAAATGGAAGCGCCCCAGTGCTACCGG 19478 30 100.0 35 .............................. AGATACTTCGTCCTTAAGTCCTTCAAGCTCATAAA 19543 30 100.0 35 .............................. TATTTTTTTGTTGTCCGGATAAATTCCAGTTAAAG 19608 30 100.0 37 .............................. AAAAACACGAACGAGCTAGTTTTCAATAATAAATGGG 19675 30 100.0 36 .............................. TAATGCAGTTGTGATTAAGCTTAACTATCAAGACAA 19741 30 100.0 37 .............................. TGTCGTTGAATTTGGTAGAAACTAAAAGGAGGAAAAA 19808 30 100.0 37 .............................. ATTCCTACCGTTTCAGAAAGAGGCGTTAGCGTAAAAG 19875 30 100.0 34 .............................. ATGAGAAATTGTCTATCTGATGGTTGGAAATCTT 19939 30 100.0 34 .............................. TATGGCTCTACGGTTTTTAATGGCGTGAGGAGTA 20003 30 100.0 33 .............................. CATAGATGATTATCCAGTAGTCATAATAGGAAA 20066 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 182 30 100.0 35 GTTTCAAATCCTAAAAGGATAAATTTATAC # Left flank : GCTATTGGCTCAAGTATAGTTTTATAAATGCTTTCCATATGGTTATTATAATATAAAAAAGTAAGCTCCAAATCCTAAAAAAGGTGAATTTTATACCATTTTGGGTTTAATGAGATTTTATCAATGGATTTAAATGAATTTATAGATTATTTTGAGATAGCAAAAAAAGGATAAATGAGGCTTAAAGCTTGATATCTTTATATCTTGCATCAGTTTTGCCAGTGTAAGGCTTTGAGCAGCTAAAATCAAAATGACAATAAAATTTTATTAAAGCAAAAACCAAAACCATAATAATAAAACTAAACATTTATAAGCCTTTTTTAAAAAAATACCATAAAAGGATTAAATATGTCAAATGCTACTTTAACCTTTGGAGTGGATTTAAGTGAGTTTAATACTGCTTTTAATAAAATTAACAAAACAACAACCACCCTAAGCGATGCCCTAGATAAAAACATAAAAACAGCACTAACAGCGATAAAAAATGCAAATCACAAAAA # Right flank : CAGCAACAAAAACAGCTAAATTTAGTACTTTGTACCAAGTTTTACTATATTTATTTTACTAAAAAATGGCTTAATATAGTATTTATAAAATCATCAAATAAAGCATTTAAGCTATTTTATAAATCTTAAATATAGCTTTATCAAGTTATTTAAAGCAATTTTTTTTAAGTATTTAGGCAAAGGTTGATCCATAAATAAATCTAACTTAACCATATTAAATCAAAATAAAAATAGCTATAAGGCAAATTTTAAACTCGCTAAACGCTTGTAAATTATTTTATTTTTTCATAGTCTATCAAGCCGATTATACCGTTTTCTATTTTTTTATGACAAGCCACGCAGTTTGCTTTGGATTTTACATCTTTTCTTAAAAATACTTTTTCATCTATCTTTCTATGCTTTTTTATCCAGTATTCATTTTGAGTTATGGCTATATTTTGGTCGTTTTTTGCATATTTAAGTATGTTAAATGCAGTTTTATCACCCCTTGTCTGAGCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAATCCTAAAAGGATAAATTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //