Array 1 3155364-3153993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053582.1 Salmonella enterica subsp. VII serovar 1,40:g,z51:-- strain 2439-64 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3155363 29 100.0 32 ............................. TAACTCTCGTTCCGTTCCATAGGTAGCTGTAA 3155302 29 100.0 32 ............................. GGGGAATGAGCATGACCGTAGCACTAAGAGAT 3155241 29 100.0 32 ............................. ACGAATGAAAAGCTGGCTTCGGCGTTAGAGAA 3155180 29 100.0 32 ............................. TTCGACAGTGATCGCATGGTTGGCGGCAAGCT 3155119 29 100.0 32 ............................. GTGATCCGTTCCGACCTGGGCATGAGTATCAG 3155058 29 100.0 32 ............................. TCGAATATAACCATATTTTGGTTATTTAATAA 3154997 29 100.0 32 ............................. AGTCTCAACGAAAAATGCTGTCTATCCGGTTG 3154936 29 100.0 32 ............................. CTGGGGCTTATTCCTGACGGTATTGAGCGCGC 3154875 29 100.0 32 ............................. TGCATGAAATGGATGGGGATTATTTTTTCGAA 3154814 29 100.0 32 ............................. TTTTTGGCCGCATCAATGCACAGGGCAACGTT 3154753 29 100.0 32 ............................. CGACCAGCATCAATATGCTGGGAGTATGGCGT 3154692 29 100.0 32 ............................. CTTTCTATCTTTCTGCGCATAGAGTCTCGGAG 3154631 29 100.0 32 ............................. TCACGATAGAAATCGATGTTCCAGATAACGCA 3154570 29 100.0 32 ............................. CGAAACATCTGGACGGCTGGATACGCGCAGGA 3154509 29 100.0 32 ............................. TTTTATACTTCATTTTCTGATTCATACACTGG 3154448 29 100.0 32 ............................. AAAATTCATGGTTTACCAGCGCCGCGACGGAT 3154387 29 100.0 32 ............................. CCCATCTACCGACTGTTATTGCTGGTGCTACA 3154326 29 100.0 32 ............................. GCGGAATGAGCGTAGTTTCCGGCAGTGGCTGG 3154265 29 100.0 32 ............................. GTTTGGTAACAATCGGTTCGGGTAGCACAACT 3154204 29 100.0 32 ............................. GTTAAATGCGGGGAAAGTGACGCAGAACGATC 3154143 29 100.0 32 ............................. CAAACAGGAAACAGACAGGCCACCGTTCGTTA 3154082 29 100.0 32 ............................. CGCTTCTTTCAAGAGGTGCTTCAGTGGACCGA 3154021 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGCGTGGTCGGCATAAACAAAGCCGGTTCCTTTTAGCTCTTGCCCTAACCAGCCCTCTTCTGCGTGCTCTTGCCACTCCGGGGCCAGAATATGCAATATGGGCGGCTGGCGACCGTCGGGCAGCGCGGATTGACGTTGCCCGTGGGCGTCGCGAATATGACGTTGCAGGCGACCGGCGCGCTGGATCAATAAATCAATCGGCGCGAGATCGGAGATCATCCAGTCAAAATCCAGATCGAGGCTCTGCTCAACGACCTGTGTAGCGATCAATACTTTACCCCGTCGTTCTGAAACGGGGGCGCTGTTACCGAACCAATTAAGCGTTTTGTCTTCAATGGCAATCCGATCGGCAAAGGCAAAACGGCTGTGAAAGAGTAATAAATCCTGCTCTGGAATGAGTCCTTCATGTAATAACTGCTGATAAATTTCCCGTGCATCGTCAACCGTATTGCGGATCCAGCAAACGCACTGCCCGGCGGCCACCACGCGGTAAATAATG # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGATTTATCGAAAACCTCCGCATCATTACAGCAGCCCGTTCCCTCGGGGTACGCCGGATTGAGTCCCGGATTGGTGCTGGCGGCGATACCATGATGGTGTGCAATCGCTAATGCTCGATCCCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGTAGCGTATTTTTCTTTTCAGTGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //