Array 1 40993-35183 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBBG01000008.1 Methanogenium cariaci JCM 10550, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 40992 32 100.0 35 ................................ GCTGTCATAAGTGCGGCCACACCTGGGAGTATTCC 40925 32 100.0 35 ................................ TATCATGGAAGTTGGTGAGAAAGTTGTGTATGTCC 40858 32 100.0 33 ................................ AGTCCCTAAATGTCATGCAACCGCTCACATACA 40793 32 100.0 33 ................................ TGTTGTAAATGAGAAATTAGATTTATCTCTTTA 40728 32 100.0 33 ................................ TCAATCCCGGCGATGGCTGCATTCCATGCCGCT 40663 32 100.0 35 ................................ TTGCACTGTCCGGATACTATCCCCCCAACACCTCC 40596 32 100.0 35 ................................ TCACCAACTTCCATGATAGAAAGATAGCATGCTAT 40529 32 100.0 36 ................................ CCAATTCCCGGGGGGGTGTTCTGATGCGGAAATTTC 40461 32 100.0 34 ................................ TATAAAATTAATATATTTAAGAGAAGAAAGAGGT 40395 31 96.9 34 ......-......................... TGAATGGTATGGAGATTATGGAGATTATGGAGAT 40330 31 96.9 37 ......-......................... TATTTGATCACGGTAGTCACTGCCGTAGTAATTCGAC 40262 32 100.0 35 ................................ TGCCTGTTGCTGTTGTTGCAGCTGATGACATCATG 40195 32 100.0 34 ................................ TGTTCGCCCGAATCCCTTGATCACAGTCCCAGAC 40129 32 100.0 36 ................................ ATCTGTGCGCTTGCGGTCCAATGCGGTCCGGTTGCG 40061 32 100.0 33 ................................ AATAGGTGATACAACTGATAATGCGACTCCAAC 39996 32 100.0 35 ................................ ATGCAGACGGTATAGTAATCTCCGTAAGCATTCAG 39929 32 100.0 34 ................................ AGACTGGGACTCATTTAAATCGGCGAATAATATT 39863 32 100.0 33 ................................ TGTATCTAGCAATCTGCTGCAAAATGTGTATCT 39798 32 100.0 40 ................................ CTATTTGCCGGGGGGGATGATGACATCGAGGAGGTGGATG 39726 32 100.0 33 ................................ CTGTCGATTACCAGGAAACACCGGTACGAGAAT 39661 32 100.0 33 ................................ GGTAGATAAATGATCCGGGTCCTCATGAAATTC 39596 32 100.0 33 ................................ CTCTGTTCTCATCTTAATACAGTCCCAAAAATA 39531 32 100.0 35 ................................ ACATCCACCTCCTCAACTGAGTCTGAGTCTATCTG 39464 32 100.0 35 ................................ TTCCCCCCCCATCTGGAGAATACACAATATCCCTG 39397 32 100.0 35 ................................ CGCAATAGCAAGCATATCACAAATGAAATGATGAG 39330 32 100.0 34 ................................ TCACGGGATGGAGTGAGCAGAACCCAGCAGAACA 39264 32 100.0 33 ................................ GGGAAACCCGCGTACCTGATGCATGAGGAGACC 39199 32 100.0 34 ................................ AGAAGAATCAATCCAGTCTTGGGCGTCCTTATAC 39133 32 100.0 33 ................................ TTGGAATGCTTTTCCCAATGCCATCATATTTGT 39068 32 100.0 33 ................................ AGTCTGTGGATGCAGCTGGAGTAGATGCCGCGT 39003 32 100.0 33 ................................ GGGTGAATCAGGAAATATCCTCAAATTCGGAGG 38938 32 100.0 35 ................................ CGAGGGGGGGCGTATGATGCGATATCTACGGACAT 38871 32 100.0 34 ................................ CCTGATTCTTGGGTGAACGGGTCAAACTGCCCCT 38805 32 100.0 36 ................................ TGCATCATCCCCCCCCTTGATGTCAGCCTTACCTGC 38737 32 100.0 34 ................................ CTGCCAGTCCTCTCTATTCATCATACGTTCCACC 38671 32 100.0 34 ................................ GGCTTGATAATTACCGGCCATCCATGCACATCGA 38605 32 100.0 34 ................................ TATCAAACCAAATAACAGCGCGTCAGGCACTCGA 38539 32 100.0 35 ................................ TTGATTATGGCGGCTCAATTGTGAGACACGGGCCT 38472 32 100.0 33 ................................ GATGTCGCCTCAACATCTGATGGCGCGTTTTTC 38407 32 100.0 35 ................................ AAAAGACACACTGGCAATGAGCGGAATATTCACAC 38340 32 100.0 36 ................................ TATCGTCTCTCCGTCATACACATCTGAAACACCGAT 38272 32 100.0 36 ................................ CGGTGTATAACACGACTTCAGCTGTGGCGCCTGTGC 38204 32 100.0 34 ................................ CGGACGTCTGATTACAAACGATAACGTTCGTCAC 38138 32 100.0 33 ................................ TTGATGAGCGAGTCTAAACGCTGGAGCACTACG 38073 32 100.0 35 ................................ TGCAGCATCAGCGGATCGCCAACGTCGCTATCCAT 38006 32 100.0 34 ................................ ATAAATCTCATTGTGATTGGGTGTGCAATAGATT 37940 32 100.0 33 ................................ GAGCATGCGCTGGTTGTCATCGCCAACAGTCAC 37875 32 100.0 33 ................................ CCACTCCTCACGCGCGATATGCGCCATCTGTGC 37810 32 100.0 33 ................................ CTCGGCAGCGGCACAACCGCCGTGGCGTGTATC 37745 32 100.0 33 ................................ AATCTCAAGCTTGAGCAGCGGGCGATAATAGAT 37680 32 100.0 35 ................................ CTCATCTGGCTCATTAAATGTGTATCCTTGTGCCT 37613 32 100.0 34 ................................ TAAGGTAAGCAAGAGCCAGATTTGCGGATGCGCT 37547 32 100.0 36 ................................ GTATCCATTGCCTTCAAGCAGCGGCCGGAAAAACTC 37479 32 100.0 33 ................................ GCCTACCGGGTATCGTAGCGGCGGACGACTACG 37414 32 100.0 35 ................................ CAAATTATCTCTAAATAATAATTTGAAGAAATTTT 37347 32 100.0 34 ................................ TTGCTCATGCTGTGATCATATCTCCTGATCATGT 37281 32 100.0 34 ................................ TTCCAGCATCTCAAACCAGTCCTCGGCCCGCATC 37215 32 100.0 35 ................................ CCATCGCTATTTCGGGGCCCGCCTCGAGTTCAAAC 37148 32 100.0 35 ................................ GACGATTCCGGAGTTTTCAAACTGGGATCTGCAAC 37081 32 100.0 33 ................................ AGCACCCGGACATAGTGTGCAGCACGGGCCATC 37016 32 100.0 35 ................................ GCTGTGTTCGGGTTGTTTTGCTGAATGAATTTGGA 36949 32 100.0 36 ................................ ACATACTGCCGGGTAACACCTACACGTTCAGCAACC 36881 32 100.0 34 ................................ GATGTAGACGGAAATCCGTTTACCATGACTGCGG 36815 32 100.0 36 ................................ CGTCGAACTATATCATTCAGGACATCACGTCAGAAG 36747 32 100.0 36 ................................ TGGCACTGATCATGCAGCGCAAACAACAGGAGGGAT 36679 32 100.0 36 ................................ TCAAATAGTGTCATTCTACATCCTCCCCCCCTCGAT 36611 32 100.0 34 ................................ CGCCAGAATGCTTCAAACTCTTCGGGAGTGTTGA 36545 32 100.0 34 ................................ TGGTGCTGATTGTTGGTGTGGCGTGCCTCTTGGC 36479 32 100.0 34 ................................ CATCGGGTAGAGGAGCGTGGGCCAGTCATAGTTC 36413 32 100.0 37 ................................ TCCGGGGGATTAGGGTGCAACCTGTTGCACCCCCCCC 36344 32 100.0 33 ................................ TTTGTGCCGGACGAGTCTACTGGGAGGGAACTC 36279 32 100.0 35 ................................ AGGTCTTGAATGTCACCCGTATTTTTTCCAGCGAG 36212 32 100.0 35 ................................ GGCTTTGATCATCCCTACCAGGGCACGCTGATCAA 36145 32 100.0 34 ................................ GCCCTCGTCCTGTCCTTTGGTCTCGTCGTCCTCT 36079 32 100.0 37 ................................ AGATCCTCTGCCTGGTAGTCCCCCCCGCTCTTCTGCT 36010 32 100.0 36 ................................ TCCTGTATAAGCAGCAAAGGGGGTATGTGTTTTTGT 35942 32 100.0 35 ................................ CATCACGACAACACCTGATTGAGCGAATCAAAAAG 35875 32 100.0 33 ................................ GGATCCCTGAAATCGCGATGCGTAATCGCCATC 35810 32 100.0 36 ................................ GAAGAGTGAAATTGAATTATTGATGGATTGGTCTGG 35742 32 100.0 34 ................................ CTGATTCACCCTGAACGAGAGGGCATATGAGCTT 35676 32 100.0 36 ................................ ACAATTGGAACGATATGGATCGGGAGGTGCTATTTG 35608 32 100.0 33 ................................ ACGTCTTTGTCCCAGTAGGCCCGGAACCGTGAG 35543 32 100.0 33 ................................ TGGATGATCGACCAAGACTACTCGTCCATCGAA 35478 32 100.0 33 ................................ ATAATCTGCGCAAGATGCCTAGAGGTGTTATAC 35413 32 100.0 35 ................................ GAATTCAGGTAACCGACACCCGCTTTACGGCCATT 35346 32 100.0 35 ................................ TACGGAGATGGCAGGGAATGGGGCCGGGTGTTTTA 35279 32 96.9 33 ............A................... GATGATTCAGAGTTTACAGAGGTGACCTGCAAA 35214 32 96.9 0 ...................C............ | ========== ====== ====== ====== ================================ ======================================== ================== 88 32 99.9 34 GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : TCAGCGGGTGCAGAATTCGGTTTTTGAATGTCTGCTTGACCCTGCCCAGTTCGCAAAGCTTAAACACTCTTTGTGCGGGATTATAGATGAGGAGAAGGATAGTCTCCGGTTTTATTATCTGGGGGGGAAGAACTGGAAAAACCGGGTCGAACACTATGGTACCAAGGGTGGGTATGATCCGGAAGGACTATTAATTGCATGATGGCTGCGAACCGGAAGCGACCAGAGAATCCCGGGGGGGAGCTTCGCGGGAAAATTATTTTTTTACATATAACCTTTTTGATGATTTTTCCGGATGATACGGAACGGGATCTTTCTATAGGATCCTGACGTGGCCCCGATCAGAATTCATACTAAAATATAATTTGTATTTATTGTGAATCAGATTGCATCTTTTTTTTCCAAACGTATCGATATGTTTCGCAATTGGCAATTGTCAGCTGAAGAAATAGAACTCAATGCGTAATTTAATAATCAAAAAAGTATAGAATACATTTGCA # Right flank : CAGCAACAAAATATGTTTCTATCCTCTCTATTCCTCATCGATTGTGCGTTTCTTCCTCCCGAAACAGAGAATTGCAATTCATTCATTCATTCATTTTTGGAATGAAAGCACCAATACGCCAGTTAACGCTCAAATTGCGTATAAATCGAGCGCAAACACCCCCCCCAAGACACCCCCCCCACACCCCAAAAAAACCCATCCCCCCCCACAGAAGCCCGGAGCGGGCCGATCTCACCCAAAGACACCCCCCCATACATCCTCTCAAAAAAACAGACAAGCACGCCCCCCCCATAATACTCTGCAATAATCAGACAACAGCTAAAATAACGCACAGAACAACCGTATTTATAGGCCATCCGGGAATGGGCAAAACGGCGCCCGTTTCTGCCGTATTTTCCCAAAATAAAGGGAGCATGGGGGGGGCAGAGAATCTGTTATTGCATAGCCTGCAACCGGGGGGGTACGGCACTGCCTATATGGATGAGGATGGGGGGGATACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //