Array 1 28855-26800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034666.1 Moraxella catarrhalis strain 5P47B2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28854 28 100.0 32 ............................ GTGCAGCTTGGGGCAGTGAATCAGCAGAGGCA 28794 28 100.0 32 ............................ AAAGCCATCTTGACCAATCACTGCGTACGCCC 28734 28 100.0 33 ............................ ATGTAAAACCCAAAAACATAAACTCATTTCTAA 28673 28 100.0 32 ............................ TGTGGGCGATTATTAGCAAAAATTGGAAACTT 28613 28 100.0 32 ............................ AAAGCCTATAAGCCCAACGCCACCGTCATTTA 28553 28 100.0 32 ............................ TTTTGCCTGATGCGTGTTTTTTGCAATAAGCC 28493 28 100.0 33 ............................ GCGGTCGTGAAGGCCTGGACAGACTGGGTATCT 28432 28 96.4 32 ...............A............ TGCCACTGTGTACACAGCGTGGCAAGGGTATC 28372 28 100.0 32 ............................ ACCCCAAAATACATCTACACCGATGATAACAA 28312 28 100.0 32 ............................ ACGCTGTAAAGCGTTTAATGTTTTGAGCGTCA 28252 28 100.0 32 ............................ TAACAAATCATCAAGACCACCACCGTCTCCGC 28192 28 100.0 32 ............................ AAGAACTAAACGCCCAAGCATTTGACGAAAAA 28132 28 100.0 32 ............................ TATCGCAATTTTGTTAAAAATGTGATACCCTT 28072 28 100.0 33 ............................ TTATCACAATGCGTCAAACACAAGAAGCATTTC 28011 28 100.0 33 ............................ AACATTCCATTCAAATTCAGCAGTGTAGACATT 27950 28 100.0 32 ............................ ACAGGCACTATGGGATTGACATTTGGTTTATT 27890 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 27830 28 100.0 32 ............................ TAAGAAAAAGCCCCTGTGTCAAACAGGGGTTT 27770 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 27710 28 100.0 32 ............................ TACAAAATGACAGCTATCCCATCCGCTCATAC 27650 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 27590 28 100.0 32 ............................ ATCTTTGTTTTTTGTGATGTTGCAAATCTCTG 27530 28 100.0 32 ............................ AAACGGTGGGGTCTCATACTTCATCAATCCGT 27470 28 100.0 32 ............................ GCACTTTCAATGCTTGGTATCTTGCTGTTAAC 27410 28 100.0 32 ............................ GTGGGCAAGTCTTTGCTGATAAAATCACAGGT 27350 28 100.0 32 ............................ CAAGTGAGTTTGATAGAAGCTTTAAATCTTCT 27290 28 96.4 32 ..........A................. TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 27230 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTGTCCAGGC 27170 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 27110 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [27068] 27067 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 27007 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 26947 28 100.0 32 ............................ ATTACAAGGTTTTAAATAATCATTTAACGCTG 26887 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 26827 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.6 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //