Array 1 7561-9361 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSR01000076.1 Salmonella enterica strain KW867 NODE_76_length_20656_cov_14.441424, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7561 29 100.0 32 ............................. AAATTGCTCGAAATTGTCGCCTATTGGGAAAT 7622 29 100.0 32 ............................. GTTTCCAAACTTTTATATTTCTGTGGACAATA 7683 29 100.0 32 ............................. TCGGCAGCTACTTCGGTGTTAGGCGGCATCCA 7744 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 7805 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 7866 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 7927 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 7988 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 8049 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 8110 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 8172 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 8233 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 8294 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 8355 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 8416 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 8477 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 8538 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 8599 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 8660 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 8721 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 8782 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 8843 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 8904 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 8965 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 9026 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 9088 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 9149 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 9210 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 9271 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 9332 29 96.6 0 ............T................ | A [9359] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAGCCAGGATATTTGGTCTTATCAGCAGCAGGCGGCGTTGGAATGGCTGGTGCGCCAGGGGGAGCAAAATGGCTTTACCCTACGCGAGGCGAGCGTTGATGCTTACCGGCAGCAGCAGATACGTCGCGAGAAATCCCGGCAGATGATTCAGTTTAGCAGCGTGGACTATACCGGCGTGCTGGTGATTAACGATCCCGCGCTTTTCCTGCAACGTCTGGCGCAGGGGTACGGTAAAAGCCGGGCGTTTGGCTGCGGAATGATGATGATCAAACCCGGAGATAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1645-1373 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBSR01000173.1 Salmonella enterica strain KW867 NODE_173_length_6883_cov_13.205447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1644 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 1583 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 1522 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 1461 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 1400 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //