Array 1 684400-682297 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIJ01000001.1 Klebsiella pneumoniae strain TUM14056 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 684399 28 100.0 33 ............................ CATGAGCAAGACAAAAAGACCATCGAGCAGGAA 684338 28 100.0 33 ............................ CGAGCTGACTCTGAGCGCATGCTGGACAAGCTC 684277 28 100.0 33 ............................ TTAAGCCGCCATCAGGCGGCTTTCTTGTGTGTA 684216 28 100.0 34 ............................ TGACTAACGAGGAATTACAGGCTGTATTAGCCGA 684154 28 100.0 33 ............................ CCTGGGATTTTAGCGTCACATACCTGGCGTCAA 684093 28 100.0 33 ............................ CACTCTGAATGTAACGTGCAGCATCATTCAGCT 684032 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 683971 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 683910 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 683849 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 683788 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 683727 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 683666 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 683605 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 683544 28 96.4 33 .......T.................... CGTCGTGAATTACGGCAATACGCTGGACCGCAA 683483 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 683422 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 683361 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 683300 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 683239 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 683178 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 683117 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 683056 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 682995 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 682934 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 682873 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 682812 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 682751 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 682690 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 682629 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 682568 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 682507 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 682446 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 682385 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 682324 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 35 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 693853-693153 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIIJ01000001.1 Klebsiella pneumoniae strain TUM14056 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 693852 28 96.4 33 .............A.............. CTGATTCAGATACATCACCGCCACCGAGATAGT 693791 28 96.4 33 .............A.............. CCGCACTATCCCTGCTGCGCCTGGCATCCAGAT 693730 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 693669 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 693608 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 693547 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 693486 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 693425 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 693364 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 693303 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [693298] 693241 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 693180 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //