Array 1 1105468-1106594 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP026238.1 Citrobacter freundii complex sp. CFNIH9 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   1105468	    29	 100.0	    32	.............................	TATTACCGCGAAAACATGCCCGCGTTTAAGTC	
   1105529	    29	 100.0	    32	.............................	AATCATTTATTTATCCCTGATTATTTATTAAT	
   1105590	    29	 100.0	    32	.............................	TACCACTGGCGCGGGCTGTCTTTCCAGTACAT	
   1105651	    29	 100.0	    32	.............................	GAATTTAACCTTCACGCCCTTCTCTGTGATTT	
   1105712	    29	 100.0	    32	.............................	ATTTAACCTCGGCAGGTGTGTTGAACGCCCCG	
   1105773	    29	 100.0	    32	.............................	GCCGCGGATCAGGACGGCAATGAGCGCACCTA	
   1105834	    29	 100.0	    32	.............................	GAAGGAGCTGGCTTTCCTCCGGCGGTTTAAAA	
   1105895	    29	 100.0	    32	.............................	ATTTTGTTCTTCCACATCATCAACTCCGTATG	
   1105956	    29	 100.0	    32	.............................	CGCGTTCCCAAGCGTGGCCGCCTTTAAACCAG	
   1106017	    29	 100.0	    32	.............................	TGTCGATCAGCACTAATTCGCCGGTGTTCAGG	
   1106078	    29	 100.0	    32	.............................	CTGATCATCGTGAGCGAGAACGAACGCCTGTT	
   1106139	    29	 100.0	    32	.............................	CGCTGGCATCAGGCGTACCGGCACTTTAATTC	
   1106200	    29	 100.0	    32	.............................	TAAACCGTTGTCAGCCGCTTATGCATTGCCTC	
   1106261	    29	 100.0	    32	.............................	GTGGGTTAAGTCGCTGTTGATAATACGATGTT	
   1106322	    29	 100.0	    32	.............................	TGAGGTTTTGAGCGAAACAGTCGTTCGCTCGT	
   1106383	    29	 100.0	    32	.............................	CCCCGGTCATTTCCTCTGATATCGACTAGTTT	
   1106444	    29	 100.0	    32	.............................	TTTTATGCGACCGTTTAAACAGGCAGCGTGGC	
   1106505	    29	 100.0	    32	.............................	AAAAAGATCTTGATAATGATGCTGATGTAAAA	
   1106566	    29	  82.8	     0	............T............GGTA	|                               	
==========	======	======	======	=============================	================================	==================
        19	    29	  99.1	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATCGAAGATGTTCTCGCAGCAGGTGAAATCCAACCGCCGTTACCTCCTGAAGATTCACAGCCCATCGCAATCCCACTTCCTGTTTCTGTGGGGGATTCTGGCCATCGGAGTAACTAACGATGAGTGTGTTGGTTGTTGTTACAGAAAACGTACCACCTCGCTTGCGAGGCCGACTTGCCGTCTGGTTGCTGGAAATTCGAGCTGGTGTATACGTTGGTAATGTTTCAACGAAGATCCGCGAGATGATATGGCAACAGGTCTCCGTTCTGGCAGAAGAAGGGAACGTTGTCATGGCGTGGGCAACGAATACGGAGTCGGGCTTTGAATTTCAGACGTGGGGTGAAAACCGACGTATTCCGGTGGATCTCGATGGATTACGATTAGTGTCGTTTCTGCCTGTTTTAAATCAATGAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTGGATTTCTTGTATGCCAAAAAAGGCTTAAAATTCAGTTGGGTAGTTTTAGA
# Right flank :  AATTTTAGCGTTACGTATTGAGCCGATGATGTCGTATTCTCTGCTGGCACAGGGACGAAAATGATAGCCCAACGTCTTCATCTAAAAAGGTGCTAAGAGTTTTTACCCGCTTTTGCCAGTTCTTTTACCAGCGGCAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCGGCCCGGTAACGCTTTATCAATGTGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGGTTCCAGTTGGTCGCTTCAACGGAGAGAACGGAAATGCCCGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTGCCTTTCGGATAGTCTTTGTTCAGACCTGGATTGGTGCTGGCAACGATACCGCGGCTGTGCGCGATAGCCAGTGCCCGGTCGCGCGTCAGTTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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