Array 1 149622-151058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJJ01000005.1 Pectobacterium brasiliense strain Y21 Y21.scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 149622 29 100.0 32 ............................. AAGCCATGCTGGAGGCGGTAAACAAAGAGCAT 149683 29 100.0 32 ............................. TCGTTGATTTCGACACGCCTGACGGCTTCAAA 149744 29 100.0 33 ............................. AAGGTATCTAGCGCCGCACTCCTGCAACCATTC 149806 29 100.0 34 ............................. TACGTTCTGACGACGGACTATGAGATCGTGGGGC 149869 29 100.0 32 ............................. CTCACCGTTTCTGCGACAGGGGCGGCAGCAAT 149930 29 100.0 32 ............................. CAACCAAAGCGCCGGAAGCACGCGAGGGGGAT 149991 29 100.0 32 ............................. CATCATGCAGGATTTCCAGCAGAAGACCGGAT 150052 29 100.0 32 ............................. AACATCGCTTCGCAGGTATCGGAGGCACGGAC 150113 29 100.0 32 ............................. CCCGTCGTCAAGCGGAGGAGCAGGCCAAACAG 150174 29 96.6 33 ............................A GGGTGGTCATTACGTCAGTCTTGACGCGCTGGT 150236 29 100.0 33 ............................. GTGACGTGACGCGCGTTCAGTACGAATGCTCCC 150298 29 100.0 32 ............................. AAAAAATACTATACCCATCTATTCCTTTGTGT 150359 29 100.0 32 ............................. CCTTAAACAGGTGCGCAATCGTGCGTACTGGG 150420 29 100.0 32 ............................. TCGGCAACGATGTGCGCGATGTTATCGCAGGT 150481 29 96.6 32 ............T................ TGCGGCGTGATCTGGGGTTGTCTCCGTGGCCT 150542 29 96.6 33 ............................A GACAATTGCTTTGTAGGTTGCCCGACTGGCGGT 150604 29 86.2 33 ........T....A..T........G... ATTGATGATGAAGAGCAGCAAAAGGCGCTCAAT 150666 28 93.1 30 .A...-....................... GACAAACAAGTCGCACTCTGCGGCAATGCC 150724 29 93.1 32 ............T...T............ ACTGCATCAAAGAGTACAACGCCACCCTACCG G [150726] 150786 29 96.6 32 .........A................... CGATCGATTGCTGATTACATCAACTCGCTGGA 150847 29 100.0 32 ............................. GTAAAACGTCAGAAAAAAGTGTTATTGCATCA 150908 29 96.6 32 ........T.................... CCTCCTACGGTGCCGCCCGTACCTCTATGCGT 150969 29 96.6 32 ............T................ CAAAGTTCATTCACTGATGGTTCATCTCCACC 151030 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================== ================== 24 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTTTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCTCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCCGCACGGAACCAAATCCCGCTGCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTTACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGTATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAAGCGGGCAGTGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCAGCCGATCTGTATGAAACAGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGGGGAAGTATTCCGCCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 166908-167476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJJ01000004.1 Pectobacterium brasiliense strain Y21 Y21.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 166908 28 100.0 32 ............................ CCTTCATGCTGCGGATAACCATCGCCGCCTCT 166968 28 100.0 32 ............................ AGTCTGCCGGATAATCTGTCTGTCGGTGGCTA 167028 28 100.0 32 ............................ TGGCGCACAAAAACCAAAGTGGAAATTTACAT 167088 28 100.0 32 ............................ AAGAACGGTACTTATCCGCCACGTTCATCAGA 167148 28 100.0 33 ............................ CCTGAGCGCATGCCGCAAGAGTTCGTCGATAAA 167209 28 96.4 32 A........................... GGCTTACCGTCAACGCGAGTTACGCCGCCGCA 167269 28 92.9 32 A..............A............ ATTCACGATGACGAACGGCCGCCGCATCGATG 167329 28 89.3 32 .G......T..C................ CACGGAACCAGCGGCAGCTTGCCCGCATCAAC 167389 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 167449 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGCTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTAGGGGGAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173971-173403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJJ01000004.1 Pectobacterium brasiliense strain Y21 Y21.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173970 28 100.0 32 ............................ TCCTATCGCCTCTAATGCCTTTGCAATCAAGT 173910 28 100.0 32 ............................ ACCGTGCCGCAGCCGCTCAGCCAGTCAGACGT 173850 28 100.0 32 ............................ AATACAACGCAAGTTGCATCAACTGCGTTCGT 173790 28 92.9 32 ........T......A............ ATAACGGGAATGTACTGGCCTTCAAAAAAGGC 173730 28 96.4 32 ...................A........ AGTGATGAGAAAATCACCCCGCGTCTGTTTGT 173670 28 96.4 32 ...........G................ GGCTTTATACGCCGCGTTGAACTCCAGATCGT 173610 28 89.3 32 C..........G.....T.......... TTTAGACTGTGCAACGGACATGATTGATTGAC 173550 28 96.4 32 ...........C................ TGGAGTCTGAATGTTCAGGGGAGAAGATATCA 173490 28 96.4 32 ...........C................ TTCTGAGGCGTAATGTTCGATAAATAATTCAG 173430 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 10 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTACCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACTGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCCAACCCTAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGACCCTGT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 182544-183051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJJ01000004.1 Pectobacterium brasiliense strain Y21 Y21.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182544 28 96.4 32 ...........T................ AGAGTAGGTCTGAACCCAGTTGATTCAACGAT 182604 28 96.4 32 ...........T................ ATTCTATCGCCGAGGCGGAATGGATTCCCCAA 182664 28 100.0 32 ............................ ATTACGCAACACTGAAGCGCGGCAGTTTTGAC 182724 28 100.0 32 ............................ ATCTCTCACCAAATCATTTAACTCAACATGCC 182784 28 100.0 32 ............................ GCCCCCGTTAACAAAGTCAGGCAGGTGGTTAC 182844 28 100.0 32 ............................ CGCAACGCGGCACACGGCGGACGTGGGGCTAT 182904 28 100.0 32 ............................ TTGACGCCGCCTTTAGGTTTAAGATGTTTGGT 182964 28 100.0 32 ............................ GGTGAATTGATCCGCGACGTAACCGGCATTAT 183024 28 78.6 0 .............C........A.ATGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAACA # Right flank : CTTATCGGGATGCGTCGCTGGTGCGACGCATTTTAGAGGCTATTCCCCGTTGAGGGTGACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCACCAGTATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGCC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //