Array 1 65431-63466 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXU01000016.1 Salmonella enterica isolate STY47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65430 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65369 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65308 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65247 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65186 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65125 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65064 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65002 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64941 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64880 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64819 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64758 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64697 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64636 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64575 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64514 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64453 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64392 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64331 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64270 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64209 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64147 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64044 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63983 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63922 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63861 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63800 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63739 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63678 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63617 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63556 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63495 29 96.6 0 A............................ | A [63468] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83055-81562 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXU01000016.1 Salmonella enterica isolate STY47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83054 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82993 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82932 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82871 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82810 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82749 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82688 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82627 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82566 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82505 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82444 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82383 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82322 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82261 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82200 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82139 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82077 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 82016 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81955 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81894 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81833 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81772 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81711 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81650 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81589 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //