Array 1 247650-244312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGW010000002.1 Tyzzerella nexilis strain MSK.23.13 BMKJCLFH_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 247649 32 100.0 33 ................................ GACAAGTTGTACAAACGTCGGAGACGGCATCTA 247584 32 100.0 34 ................................ TCCATTGTAAAAGCTATAAAACTGTTCATGAAAG 247518 32 100.0 35 ................................ ATAATCTCTTGTAAATCACTTTGTGATATGTTTTC 247451 32 100.0 33 ................................ TTTAGGCTTATTAAACTGCTGTAATTTGTCGAT 247386 32 100.0 33 ................................ TCAAAAGAATAAGCGTAGAGACGCTAGGAAATT 247321 32 100.0 33 ................................ CACTTTTAACGTACAACACACACATACTACTAC 247256 32 100.0 33 ................................ TCCATATCTGCATTTGTTGTAGATTAACATTTG 247191 32 100.0 35 ................................ CTGGTCTCGACAGAATGTAATCTTATGCAAGTTAC 247124 32 100.0 34 ................................ CAACTATGCGGTATTGGTTAATAATCCGCACTTA 247058 32 100.0 34 ................................ AAGCGAGATGTACGCAAGGAATACGGGGTAAAAC 246992 32 100.0 34 ................................ TTTTAAAAACCTCATGTGAAATCTACGATTAAAT 246926 32 100.0 34 ................................ AATCTGACACCACTCATTTGACTTTTCGATTGTC 246860 32 100.0 33 ................................ TTGGTAAAGCGTAATATCCCATCCGAAATCTCC 246795 32 100.0 34 ................................ ATCATGCAATCACTTCTTGTTTCTGAAGAACCGT 246729 32 100.0 35 ................................ GATTAGATGATGTTATTCTATTTGTAGAAAGAAGG 246662 32 100.0 36 ................................ TAAAGTCGGTCTTGGTAGCATTTGGAGTAGTACAAA 246594 32 100.0 34 ................................ AATTCGATAATTTCACCGTAAAGCTGCATAAATC 246528 32 100.0 37 ................................ TTGTGACGTACACCAAGCAAATGCTTGCAGAATCAGG 246459 32 100.0 33 ................................ TTGCGCACCTGATGTGCTAGTATCTCATTTTCC 246394 32 100.0 35 ................................ ACCTCTCTAATATCTATGTGTTGCTGTTTGTACTT 246327 32 100.0 35 ................................ ATCTGCGTGTTTATTATATTTGTAAGGGCAGGGAC 246260 32 100.0 34 ................................ TAACGTAAACGCCTTATTTTGCGAGCTTTGTACT 246194 32 100.0 32 ................................ TTTACAGCAATTCGATTCTCGTACATCATCAG 246130 32 100.0 33 ................................ TCCTATCTCGGAGATGGCTCCTATGGCATTTTC 246065 32 100.0 33 ................................ GAAAAATAATAAACATCAAGATTATTTTTAGAC 246000 32 100.0 34 ................................ TCGACAGTGGGCTACCCGTCTTATGTTAGAGGAG 245934 32 100.0 34 ................................ GTGATTGTGATGTGACATAAAACTACAAATAATA 245868 32 100.0 36 ................................ TGCTTTTTCTTCCCACGCTTTTAACCTCTTGTCTGT 245800 32 100.0 35 ................................ TTTTAACAGTCTCGGTACATCCTTAAACTCCTTTT 245733 32 100.0 35 ................................ ATTATAGCGGTCAAGAGCAAGGCTTGCTTTCGCTT 245666 32 100.0 33 ................................ AATCTGCTGTCACTCTTAATGTCCGGTCTGTAC 245601 32 100.0 33 ................................ TAGTGGTCTGAATGCAGCAAAGTCGGTTGTGTC 245536 32 96.9 35 ....T........................... GCTCAATTCAAACAATGATCCTACAAGCTCACCCA 245469 32 100.0 34 ................................ CTCTGTATCAAATTCTAAAACAATATAATTATTT 245403 32 100.0 33 ................................ ATTGAAAGAATAGCTCCTGGGGTATTCAGGAGA 245338 32 100.0 34 ................................ TTATTCGGTTTTGTTACAAATCCGTCTAAAATAA 245272 32 100.0 37 ................................ AATTATTTTAAATTTCGGTGTTGACAATTCAATTTAA 245203 32 100.0 35 ................................ AAGGTTGGTTGTATTGGTACAAAGAACAGACAGGA 245136 32 100.0 35 ................................ TACTTAAAAAGGCGAGGTGTTTTACCCCGCCTAAA 245069 32 100.0 34 ................................ TTCCATGTTGCATCATAAATAGGGCAGTCACTGT 245003 32 100.0 33 ................................ TTCCGATGACCCTACTAAAGGTGGTAAATTACT 244938 32 100.0 34 ................................ GATTAAACCAGCTTTTAGGAGATCGTCTCGCACC 244872 32 100.0 33 ................................ TTTTTCCACGAAACCGCCAAGCTCACCCGCTTT 244807 32 100.0 33 ................................ ACAGAATTAACTTGCTGTGTTATATCGATTGTG 244742 32 100.0 34 ................................ AACATTTAGCCGTTTTATTTCCACAATATATAGC 244676 32 100.0 35 ................................ TTTGTATCTACGCTTGTTTTAAAAACACTGTTCTT 244609 32 100.0 36 ................................ TTAGATATGTAGAAGAGGACAAAGCAGAGGAGCTTA 244541 32 100.0 34 ................................ GTTATCGCAGATGGATCCATCCGATCGGGAAAGA 244475 32 100.0 34 ................................ TCCAGCTAAAAAACCGAGCATTGTGAGTATTATC 244409 32 100.0 34 ................................ GAGCTTGGTATTTTGGAGACAGACGGAAAACTGG 244343 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 99.9 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : CAGGAGAAAGATGAAACAGATGCAGGCATATCTTCAGGAAGTTTTAAAGAGACAATATAGTACAGAAGGATTTAAGGATATACTTAGAAAAATAAATACAGGATTATCTTGTGTGTTAAAGTGTGATAATGTGATTTTACTAGGTGGTTATAAAGGATTACTTCATTCGATATTATTGGATGCGAAGCAAGAAGAGTATTCTAACGGAATATACATAGACAATGAGAAAAATTTGCCACATGGGATTGTTTGCCTGACATATAAGAGATAATACGGAGGGTTCTGTAAGAATAGAAAAATGTAGTGAAAATATACACAGAAAATGTTGAGTGCGAATACCTGGTAAACAGAAATTTCCTGGGGGATTCGCACCGAAAAACATGTCGTATTTGGGTTGAATATGAAATTGATTGTGTGATAGTCTTGTAATGTTGGGAAAAAATTAGTATAATTAACAAAAGATTGACTGATTATAAAAGAAAAAATTAGTCAATGTTGCA # Right flank : CACGAGAAACTTTGTGGGAATGAGTGGGGAGTGTGGTAACACAAACAATTAAATATTGAATTTGAGGGGGACTTGGAAAAAAGTATCCCTTTTCAACGTAAGGCGTTCAGAAATGAGCGTCTATTTTTTACCCAAAATGAAATGAGCATTAAATTTATGAAAAAAATATTGAAACGATTGTGTACGGGGGGCTTTGCCTTTTGCGGCTGTATTTACTGATTTGTCGGCTATACCCGTTTTTGTGGAACACAAGTAATACTGTACTGGACGAAGTCAGAAGAGCGTGTCGGTATCGTTGAAAAAGTGATGAATGACGGTTCAATTGGTTCTACCTTTAATGAGGGATACATAAGCCGAGGGTGAAACTGCCTGTTGTATTGACATGAATACCGCCTTTCAGAACGGCTGCAAGACCAAAGCCGACGCAAGCGCACGTAAGAGTGGCGCAAAGCAGCCGGCTAAAAATGTCAAGGTACTCGTTATTTTGCGTTCAAGAATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 257198-256159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGW010000002.1 Tyzzerella nexilis strain MSK.23.13 BMKJCLFH_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 257197 33 100.0 35 ................................. CTGTATCCGTTGCAACATTTGTATGATAAACTCTT 257129 33 100.0 34 ................................. AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 257062 33 100.0 33 ................................. ATATTTGATCTCCTTGTAAATTATCCTTGCTCC 256996 33 100.0 36 ................................. GAGATGAATGGACACAAAATAGGACAGTGGCTTGTA 256927 33 100.0 34 ................................. TTGATTGTGGGCGCTCATTCGCCAACTCTACTTG 256860 33 100.0 34 ................................. TTGGAATCGCGTTGTAAAAGCTCTATCTAGCAAC 256793 33 100.0 34 ................................. GTAGTACTTAGGTATAAAACCCTGTGCTTAAATA 256726 33 100.0 33 ................................. ACGCTTCGTCTCGTCCGCTCTCCCCAGACGGTC 256660 33 100.0 33 ................................. TTCCCAATAAGAATGAATGGCATCTTCATGCTC 256594 33 100.0 33 ................................. TTGATAATCCGGATTTGTTGGAGGTGGAGTGAT 256528 33 100.0 34 ................................. TTCTATCAGTTACAATATACGTCTCAGAAATATT 256461 33 100.0 33 ................................. TGACAGTCTTTCCACTAAGCACATCGTCAAAAT 256395 33 100.0 36 ................................. AAACACAATATCATCACAAATCCTGTCTATAGTAAT 256326 33 100.0 35 ................................. CTTTGTAGTCAGAGCTCCTGATGCCGCCAAAACCT 256258 33 97.0 34 ...........G..................... GTAGGTGTCGCTCCACTTGTAAACCAAAACGGAT 256191 32 84.8 0 ...................T-.A..T..T.... | G [256166] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 98.9 34 GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Left flank : CAAGAGATCTGAAGTATCTGTGTGAGAATGGGTATGAGCTGAAGAGAGTCAGGGCGGTGGATATGTTTGCGAATACGGTACACGTCGAGACTTGTGTGTTGCTACAACGAAGAGCTATGTAGAAATCCTTAATTTTAGGCACTTTGCGAAGCATTTCGTGTTTTCACCAGAGGGGAAAAATAGTCGCGATAAACACCTCAAAAACTATTTTGATGTTTCGGTGGTTGTTGATATAGGGTGTGGGAACACAACAAATTAAATACTAATTTCAGGGATACTTGTTAAATATCCTACAGAATTTAATTGTCGAAAATATAGAGAGAATATTAAGTGCGAATGTCTAGTAAACATAGATTTTCTATGGGATTCGCACCAAAAAATAGTTCATATTTAGGTTGAATATGAAATTGATAGTGTGATAGACTTGTAATTATAGAGAAAAATTAGTAGAATTAGCAGAAAGTTGAACGATTGTAACAGAAAAATTAGTCAACATTGCT # Right flank : ATTTGAAGATATATAGAGACAGTCTGTCAGACGAAACGGAGATCAAAGACGTAGAAGAATTGTTAAAGTATTATATCAATAATAGAGAAGGTCTGATAGCGTATCAGTCACAAGGATTAAACTTACCGGAACATCCGGATGGATTGGAATACAGAAACATGGGAACTATGGAAAACCACATCTGGAGCGTGATTGCAAAACGAATGAAGCACAGTCATACCTGCTGGAGTAAACGGGAAAATCATCTGGCAAAGATTCTTGCAAAGAAATGCGGTGGAAAGTTATACGAAGTAACAGAAAAGTCAAAGCATGCCATATTCAAGGAAGAGACCGTGGAAGAAATTCTGATGGCAGAGGAAGTGGCTAAAAAAGTAGGAAAAGGATACGAATACCCTACCATAGGTCACATGGTAGGATTAGAGGGTAAAATAATAGGTGAACGCAAGAAACTGTTTGCAATGTCAGGATTTTAGTAAACAACTGTCAGAGAGAATGATAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 372351-371385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCGW010000002.1 Tyzzerella nexilis strain MSK.23.13 BMKJCLFH_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 372350 32 100.0 34 ................................ TACCCTCTACAAGAAAGATATGCAATTATTTATT 372284 32 100.0 35 ................................ TCACATGGACGAAGCAGAAAATGATAGTTGGATTC 372217 32 100.0 37 ................................ TAATAACAATACGAATATCGACTACGTGCCATATAAA 372148 32 100.0 34 ................................ AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 372082 32 100.0 35 ................................ TAAAAAAAGTGCCCAAGGTTTGCAGACCTTTTTCG 372015 32 100.0 35 ................................ TGCTCGTTTTCGATTTTTGCATCAAATTCCATCCA 371948 32 100.0 34 ................................ TTCTGAAACATGAAACTCACCTTTTTGTGATTTG 371882 32 100.0 34 ................................ GGGTTTAAAGAGAGTCAGGTCGATGTAGATGCAT 371816 32 100.0 36 ................................ TCATCATCTAGTCTTCTGTCCCAGTCCTCTGCAATC 371748 32 100.0 34 ................................ CGACCTTTATGAATCTGATTACAAATAAGTGTCC 371682 32 100.0 33 ................................ TCAAGTGCACAACTTTTTGGACTGGAAATTAAA 371617 32 100.0 37 ................................ CATATACAAATGCTCCTGCCACAAGTGCTGTGCCTGC 371548 32 100.0 35 ................................ CGGCATGGATTACTGTGGAGATGGTACAAGCTGCC 371481 32 100.0 33 ................................ GTACACCTCGCTCTACTTTTAATGTCCAGCATA 371416 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 35 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : CCGGTGTTTCTTTGGAAATGAGGCGAAAATGGAATGTTAGTGTTGATTACATATGATGTGAATACAGAAACAGTGGCAGGAAAAAGAAGATTGCGCCAGGTAGCAAAGCAGTGTGTAAATTATGGAAGAAGAGTACAAAATTCTGTATTTGAGTGTATTTTAGATAATGCGCAATGTGTTATGCTCAAGGCAAAGCTGACAGATATCATTGATGAAGAGATTGATAGTCTGAGATTTTATTACCTGGGAAACCAATATAAAACGAAAGTAGAACATGTTGGCGTAGACAGAGGTGTTGCTGCTGATGGAATTCTTATCATGTAACAGGAGTGCGAATGGCAAGTATACATAAAAATGCAGGGGGATTCGCACCAGAAAAATGTACAAAAAGTAGCTAAGAAAGTGAGAATTAGGAACAAATGATAAGAAAAAAAGAATGATATTGATAAAATTTGGGAATATTTAACGTAATACAAGGCCTAAAATTGGGGAAAATTGCT # Right flank : TGCGTGTTGTGCTGCTTTCTGTTCTGCGGATTCAGGTCGGAGATATGTTGGATGAATGTGTGGAGCGCTTTCCATTTTAAATAATTGGTGATTTGAACGAAAAATATTGTAGCGGATGGAGTACGATTCAAATTGCACTAGCTATCTATCGATCAATCTGCTACAATCAGCTTATAGTGCGAGCTGAGAAATCAGCATAGCTGATTGTATATAGTAGAAAAATCCTGTCGGGTAAGGTCTAGCCAACCGCATGTACCGAGCCCTTGGAGGCAAAGCGGTAACGTTAGATTTCAGCGTAGGACAGGGAGCGACAGAGCCGAAGCGAAAATGAAGTGATCTGGGAAATGATTGTGAGGTCAGAAATGATAGATATGCTTATTAGTACAAGCAACGACAAGTTATTTTATAAAATTTTGTCCGTACAAAACAGTGTGGACAACAATATGGATTGTCAATGGAATTATACAAAGCATATTAAAAAGGGGTATTGAGCCGTTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //