Array 1 39-787 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJA01000010.1 Moraxella catarrhalis strain T12 NODE_10_length_52922_cov_46.701601, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 99 28 100.0 32 ............................ TAACAACCCCAGTGGGCGCAAACTTTTAAGGA 159 28 100.0 32 ............................ ACAATACCGCAGAAGGCATTTCTTTTGATAAA 219 28 100.0 32 ............................ TACCTGAAATCAGACACGATCAAATTAAATTA 279 28 100.0 32 ............................ CCAAAGACACCACACATCAGCTACTGCAAACC 339 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 399 28 100.0 32 ............................ TTGCAGGTGCTGAGAGCATTAGCGATAACTTG 459 28 100.0 32 ............................ GTTGTTAAGCTTTGATTAAGTGTGTTAATACT 519 28 100.0 32 ............................ TTGATTAGTTGAGTTTATATTTGCCCAATTGG 579 28 100.0 33 ............................ ATTCATCTCATCAGCCATCATTTCGCATTCAGG 640 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 700 28 96.4 32 ...................A........ TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 760 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : AGAAATTACACTTGTAATCGTCGAAATGCTTCTTGTGTC # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTACAGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGCGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 284399-284908 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJA01000001.1 Moraxella catarrhalis strain T12 NODE_1_length_284946_cov_48.104930, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284399 28 100.0 32 ............................ ACAATCTACCAAAGTTTTCACATTCTTGTAAA 284459 28 100.0 32 ............................ TTGGGTTTGGTCTTTGCTTACTCGTGTTGCTC 284519 28 100.0 32 ............................ ACTGATCCTCCCAGCGAAACTCAAAGCGAGCC 284579 28 100.0 32 ............................ ATAGTGCCTGTGGGTTGACAAATCTTTGCCAA 284639 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 284700 28 100.0 32 ............................ ACCACAAAAGTAAGGTGGGGATTTACTGCGAT 284760 28 100.0 32 ............................ GATGTCGTGCCAGATACCCAGTCTATCCAGGC 284820 28 100.0 33 ............................ TTACACTTGTAATCGTCGAAATGCTTCTTGTGT 284881 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ACCACAAAAGTAAGGTGGGGATTTACTGCGATCTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //