Array 1 30931-28585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVV010000022.1 Erwinia amylovora strain Ea1-95 Ea1-95_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30930 29 100.0 32 ............................. ATGAAGTTCAAATACAAAAAAAGCGGCTTATC 30869 29 100.0 32 ............................. GCCATGCCGGTAATCATGATACTGATATGCGT 30808 29 100.0 32 ............................. GGATCGGATTCGGTTTGGAGGCGCATTGCGGT 30747 29 100.0 32 ............................. CTGCCTGCTCTGTGGAATAATCCAGAGCGTCC 30686 29 100.0 32 ............................. TAGATGGTCCTTTATATGCCACAGTCAGAGTA 30625 29 100.0 32 ............................. CATGCGCAAGACCAGGCTAATGCATCCCAGCA 30564 29 100.0 32 ............................. ATTCTGGAATCAATAAATCAGATCCACGACTT 30503 29 100.0 32 ............................. ACAGGTGCTCTAAACACACGTCCGGGTGCCGG 30442 29 100.0 32 ............................. CAGTAATTGCTGCGGGGCTGAAAATGAAAAGG 30381 29 100.0 32 ............................. TTAAATGCGGAAACCGATTTTGCTGATTCGAT 30320 29 100.0 32 ............................. TGGTCATCGAGGATGGTTTATTACTCGCAAGA 30259 29 100.0 32 ............................. GCGACAGCATGTGGCCACGCATTCAATCTGGT 30198 29 100.0 32 ............................. TTTCCTCTGCCATCTCCTCTATTACATACCGG 30137 29 100.0 32 ............................. TAGGGATATTTGTTGAGTCAGGCTATTAGCAA 30076 29 100.0 32 ............................. CCCTGTGATCGCATTCGTCGCACCGCCCTGGA 30015 29 100.0 32 ............................. GCGCATCTGCGCACGATGAAAGTTAAAGGGTA 29954 29 96.6 32 .....................G....... TTAGCGCCCTTCTAAGCCGTAGGTCACAGGTT 29893 29 100.0 32 ............................. TCGCTGCTTTGTCTCAATGCCAACGCCGATTA 29832 29 100.0 32 ............................. CCTAACCTGGACTTCAACAACACAGATTGGGC 29771 29 100.0 32 ............................. AAATCGATTATTTCATCGTTCCTGTTACAAGT 29710 29 100.0 32 ............................. GATATCATCATCAAAGTCTGCGGGGGGCGTAT 29649 29 100.0 32 ............................. CGCCAAACTGGCGATGCAAACCAACAGACTCC 29588 29 100.0 32 ............................. CGTTGCGTGAGCAAAACGGTCTGGCAGAAGCA 29527 29 100.0 32 ............................. TACTGCGACAGCGTAACGTTAGCCGGTAACAA 29466 29 100.0 32 ............................. TTGGGGTGAGTAAATACGACTCTGTTAGAGCC 29405 29 100.0 32 ............................. CCGCATGTTCTTTTAACATGGCTTTAATATTA 29344 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAATCAGCTCGCCC 29283 29 96.6 32 .................A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 29222 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 29161 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 29100 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 29039 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 28978 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 28917 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 28856 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 28795 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 28734 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 28673 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28612 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================ ================== 39 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62895-60730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEVV010000022.1 Erwinia amylovora strain Ea1-95 Ea1-95_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62894 29 100.0 32 ............................. TGGCCTTGAGCATGTTGTCGAGGTCGCGGCGG 62833 29 100.0 32 ............................. CTGAGGCGGCAGCACAACGTGAGCGTGATGAA 62772 29 100.0 32 ............................. TCTTTAGCCATCGACTTAATTACTTTGAAAAT 62711 29 100.0 32 ............................. CCGTGTTGTGTTGAGCTGCAAGCGCGACGTAA 62650 29 100.0 32 ............................. CTCTTCTTTCAGACACTGCCAGACGTCTTCAC 62589 29 100.0 32 ............................. CAGCTTGAAGACCAATATGCAGAGACATATAG 62528 29 100.0 32 ............................. TACTGCACTTGTAGCATCAAAAGGCCTAGCAA 62467 29 100.0 32 ............................. GCAGGATTATCATTGTTGCTGGGAAAGAAATT 62406 29 100.0 32 ............................. GTATTTATGCATGGCCTCTTCATCACCTCGTG 62345 29 100.0 32 ............................. GTGGCTGACTCAGAGTTTGCGAGCATATCTCC 62284 29 100.0 32 ............................. ACCCGTCAACACCGCTTCGGCTGGAAACAATC 62223 29 100.0 32 ............................. GCAATGGCGGAGCAGAACACACTGGTTCAGGC 62162 29 100.0 32 ............................. CTTCTGGATTCCGTATCGCTCCATCGCTTTCT 62101 29 100.0 32 ............................. ATCATAATGGGTTTATGTTGAGATTTTCAAAG 62040 29 100.0 33 ............................. CACATCGATCACGCCGCAATAGTCGCAGCACTG 61978 29 96.6 32 ............................T AAACTATTTTGTAATAATGAGCGGTCGTAATC 61917 29 100.0 32 ............................. CGCACGCGGCAGATCCTTAAATATGATATCGC 61856 29 100.0 32 ............................. GTGCATGGCCATTCAGCTTCAAAGAGGCGCAA 61795 29 100.0 32 ............................. TACGCATTCGCTATAAATATACCCCGGTGCCG 61734 29 96.6 32 ............................T TCGATACTGGTAACACCAATTTCAGCATGCAC 61673 29 100.0 32 ............................. CCACTAAATGCGAGTGGATGCGGCTGGCTCAG 61612 29 100.0 32 ............................. ACATGGTTCTCATAGCACAATCGCTTATAGCG 61551 29 100.0 32 ............................. AATGCTTCACCGCCCTGCATGACTACTGGACT 61490 29 100.0 32 ............................. TACGGCACGCGCACCGCTGGCAGACCGCCGAT 61429 29 100.0 32 ............................. GTGGCTTCCGCAGCATTTTTAGCTATTTGCTC 61368 29 100.0 32 ............................. GCATGTGGGACGCGATTGAGGGGATTGGTCGA 61307 29 100.0 32 ............................. CAGCTTTGAGCTGGCGGAAAAGATCATTGAAA 61246 29 100.0 32 ............................. GCGATCTTATGGCGTTTGGAGAAAAAATAATC 61185 29 100.0 32 ............................. TCAATTGCACGCTGCCGGGAATCAAACCCAAT 61124 29 100.0 32 ............................. CAAATATCGCAAAAAACCAACTCATTGAGATG 61063 29 100.0 32 ............................. CCAGCTGCGCTCGATGGTGCGTCCGTCCGTGG 61002 29 100.0 32 ............................. GCAGGATTCTTAGTGAGTGGACTGGCAATCTT 60941 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 60880 29 100.0 32 ............................. CTCTTTAGCCAGGTTCTTTAATCCCTTAGTGA 60819 29 100.0 32 ............................. TAATGGTTAAAGTGAGCGGTGGCGGAACGACC 60758 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CAGATAAACCGCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //