Array 1 581472-580275 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS995537.1 Phocaeicola dorei DSM 17855 Scfld9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 581471 47 97.9 29 ...A........................................... ATTTTTTATCACAATCAAATGGGTATTCA 581395 47 100.0 29 ............................................... CCAAAAGCAGTAAGCAAACGGCACTGATG 581319 47 100.0 30 ............................................... TGCCTTCACCAACGTCGAAGCAGCGTATGC 581242 47 100.0 30 ............................................... AAAAAGATATCTTTTCATTGGTATACTTGT 581165 47 100.0 29 ............................................... GTTTACCTTATTAATTGTGTGTCGTTATG 581089 47 100.0 29 ............................................... TCACGCTGTTCCTTTGCTTGATTGGGCTT 581013 47 100.0 30 ............................................... GTTTCTCCCATTGAGAGTTACTGTAAAAGT 580936 47 100.0 30 ............................................... TATTAGGCTGGTCATTGGCGTTCGCCGTCT 580859 47 100.0 30 ............................................... AATAACAACCCGTGATGCGCTTAACGAGCA 580782 47 100.0 30 ............................................... TCCATATGTTCAATTTGTTATTGTTTGTTT 580705 47 100.0 30 ............................................... GATAGAACCTGCCTTTGCGCACCTACGTGC 580628 47 100.0 30 ............................................... TTCGTCTTCATTGGTTAGGTGATGATTCAA 580551 47 100.0 30 ............................................... TCTTTTCATATTCTATTCCAGTTTTGATGA 580474 47 100.0 30 ............................................... GTTCAGGGGTGCGACGTGCGCTGGTCACTG 580397 47 100.0 29 ............................................... GCGATGTTGACAATGATCAGCAGCCTTAA 580321 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //