Array 1 24485-23130 **** Predicted by CRISPRDetect 2.4 *** >NZ_APSM01000105.1 Neisseria meningitidis 75689 gnm75689.contig.104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24484 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 24418 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24352 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 24286 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 24220 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24154 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24088 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24022 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23956 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 23890 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 23824 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23758 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23692 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23626 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23560 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23494 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23428 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23363 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23297 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23231 36 100.0 30 .................................... AAGCCACGCAGATTACAGACAAGGTGTTGC 23165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //