Array 1 94349-97616 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTL01000002.1 Pasteurella multocida strain SH02 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94349 28 100.0 32 ............................ AGTCTTTCGCTTTGATTCATGATAGCTTTGGG 94409 28 100.0 32 ............................ GTATGAAGAAAGAAGACTTATGGGGTCTAGTT 94469 28 100.0 32 ............................ CATACTCTTACGACAAAGAGGTCTTGTTGAGT 94529 28 100.0 32 ............................ CCCAACTTCATCCCGTAGCATAGCTGAAAAGT 94589 28 100.0 32 ............................ ATAATGTCTCCTGTTCGTTCCATTATTTCAAT 94649 28 100.0 32 ............................ TCATTGAGAAGTCGCTTAGCGTTCGCTACGTC 94709 28 100.0 32 ............................ AGCATATAAATAATGTGCTGAGGTTCGACCAA 94769 28 100.0 32 ............................ CTGAACGTTCCACAGGTATGCTGTCTCAACTT 94829 28 100.0 32 ............................ ATTCATAGTATTACCACAAGAGTTCGATTAAC 94889 28 100.0 32 ............................ AGCGTGTAGAGAAGAAACATAATCACAACAAG 94949 28 100.0 32 ............................ CATAGTCGCTTCCTTTTAAGCAAATGCAAATT 95009 28 100.0 32 ............................ ACATCTCAATCGTAGTCTCAGCATCTGAAGAA 95069 28 100.0 32 ............................ ACCAACGGTAGTTTACTGGGTCTTGGGCCGAC 95129 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 95189 28 100.0 32 ............................ GGAAAGCGGACAATCTAAGCAGTTTGTTTCAA 95249 28 100.0 32 ............................ AAGCATACGATTGAAGGTAATAGGAGGTCTCT 95309 28 100.0 32 ............................ TATTGACAACTGTAATATTCTCTCTCTATATT 95369 28 100.0 32 ............................ AAAAGGTTTCCTTGATAATACAATGCCTCATA 95429 28 100.0 32 ............................ GAGATGGTGAAAGCTATGTCTGATAAACGTTA 95489 28 100.0 32 ............................ TGTTATGACTTTATCATACGGTGCCACAAAGT 95549 28 100.0 32 ............................ AAATGGGGATAGACCAGAACACGTTAAGAACA 95609 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 95669 28 100.0 32 ............................ TTGAAAAGACCTATCTCCTGTTCACGCACTGC 95729 28 100.0 32 ............................ TAGTGGACGCTGATAACGGTCTTCCACTTCTT 95789 28 100.0 32 ............................ ATTCGCAGGCGTCTTGAGATGTTAGTGTCCCT 95849 28 100.0 32 ............................ ATTGATTCACGGATACATCTAAACATTTTATC 95909 28 100.0 32 ............................ TTTAGTTACTCATCTAGCCATTCATTACTCAT 95969 28 100.0 32 ............................ TCCGATAAGTCAACAATCATGAACGATGACTA 96029 28 100.0 32 ............................ TAGTCCGCCATATCCTCACCACTATAATGTGG 96089 28 100.0 32 ............................ TGTAAGAATAAGTTAACCATAATGTACTCCTG 96149 28 100.0 32 ............................ AAGTACAAATTAAGTACATGGAGAAGACTAAT 96209 28 100.0 32 ............................ ATAAAGAAGACTACGGGATTCAACTAAAGGTA 96269 28 100.0 32 ............................ TCAATCAGCCCAACATGTTGACCACTATTCAG 96329 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 96389 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 96449 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 96509 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 96569 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 96629 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 96689 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 96749 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 96809 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96869 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96929 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 96989 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 97049 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 97109 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 97169 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 97229 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 97289 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 97349 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 97409 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 97469 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 97529 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 97589 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 55 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173955-173567 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWTL01000004.1 Pasteurella multocida strain SH02 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173954 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 173894 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 173834 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 173774 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 173714 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 173654 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 173594 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //