Array 1 24349-24076 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIG01000101.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24348 29 96.6 32 ............................T AAAAAATCCATCAATGCGAAGATCAAAAGTCT 24287 29 100.0 32 ............................. ATACGTCCGTCATCCATCTTGACCTTACCCAC 24226 29 100.0 32 ............................. TTAAATCTGTGGCACCGGATTTTGACATAACC 24165 29 100.0 32 ............................. CAACGGAGCAAGATAAGGTCAACGCACAAATT 24104 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTATTCCCCACGCATGTAGGGATGATCCC # Left flank : TTTCAACTCGGCTTTGTCCAGGCTTTGCTCGGAGTTGGTTACACGTTGACCTTAAATATCCACCAATTACCACAAATTAATTGGTTAGCCGCAGCGGGGCCAGTAGTGTATTTAGGCGTTGTTGCGACGTTTGCGGCACAGGTGTTGCAGATGATCAGTCAACGCTATACGGATACAGTGACGGCGGGGCTGATTTTGATAACGGAATCCCTGTTTGCCAGTTTGATTTCAGTCTTATTTCAAGTTGAGAGGCCAACGTTGCATTTGGTCATTGGTGGCAGTTTAGTGATTTTGGCGACGGTTATTACGCAGTTTGATTTGCGTGGCGTCTTTGCACGATATTTAGTCAAGGGACACCGATTTAAAGCGTAGGGTGTACTGGAAAATATGGTATGCTACTTTTAGGATAAATTGTTGAGCGTTGAATGAACTGAGTTTAAAGTGATGTAAATTGGGCTTTTCCGAAAATTAAAATGCCGGTGTAGCAGCGTTTGTTTAGT # Right flank : ATAATTGAATACTTTCTTTCGTTATACATTAATAGCGTATATAAAAAAGACCGGAATTTCGGTCTTTTTTAGTATCTGTGATTTTCCAAGTAGCGTCTGTGCAAGATTTAAATACATACACTTAGTCCTTAATCGGGTAGTAGGCATATTGAGTTGTTTTTATTCATTATTGTAGCTGACTGTCGAGTTTCAACAAGTTATATATTTAATATACTATGCTAAAACTGTATCGTTGTTGGGATCATTGGTTACTAATTCATTAACATTGGTTATTAGTGTATCCAGCTTATCCAAGTCGTCGTCACATGTTCTACCTAAAAAGTCTGAGCCAAGATCCATACACTGTTTGTCAAAGCTTGTCATGGTTATAGTGTAAGTGGTCAGGCATATCTATTAAGACACCCCTAGGCCGGTTTACCATTTGAGTCAGCGTCTGTAAATTTAACAACTATGTTGTATGGAGCATTGCTGCTGCGGTCTCTAATGACATGGGCTAAGTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 97728-98121 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIG01000152.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF249, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 97728 28 100.0 33 ............................ CAAATCGGTACGCTGAGTTGACGTCATACCCTT 97789 28 100.0 33 ............................ CACTTGCTTCGTTTAATTTGATTTTCATGATTA 97850 28 100.0 33 ............................ TTTTGGCAGGCTTTGATATTACTGTTCTTTATG 97911 28 100.0 33 ............................ TAGCGCAAAATCACATAGTTTGTGATGCTGGTA 97972 28 100.0 33 ............................ TTTCGCAAACGCACCACCACCTTTCGAGAAAAA 98033 28 100.0 33 ............................ TACCACGGCAAATGTTGTAGCAACTGTTATGCC 98094 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTATTCCCCACGCACGTAGGGATGATCC # Left flank : ATTTTAAAATTAGCTAAAGGTTACCGTGGTGCAAAGCACATCCAATTTAAGGTTGCTAAGGACCAAGTAATGAAATCTTACGAATACGCATTCCGCGATCGTAAGAAGCGTAAGAGTGATTTCCGTAGTTTATGGATTGCCCGTATCAACGCGGCAGCTCGTTTAAACGACATGAGTTACAGCAAGTTAATGCATGGTTTGAAGCTTGCTAACATCGACATGAACCGTAAGATGTTGGCTGACTTAGCTGTTAACGATGCTGATGCATTCAAAGCTTTGGTTGACGAAGCTAAGAAAGCTCTTGCAGCTTAATTAAAAATTCCAAGCCATTAACGGCAAGGTTGAGAAGGGATGTCATCATTTGGGTGGCGTCTCTTTTTTTATACATTGGTATTTTTCTGCGTATTAGCGAGGGTATTTAGGCTATAATTAAAATGCAAACTCATGCAAATTAGGGTTGTTGGAAAAATGAAATACTGTCGTGGCGCTGTTTGTTTAGT # Right flank : CCGTGGTTAAGGTCTTTGAGATAATAAAAAAGACCAACCACAAGGATTAGTCTAAAGATTAGTTTCACCGCGCCGAATTCGCGACTTGGCAAGGGTTGGTAATGACAACCTTTGTCTTTTTATATACACTAATTATAATGTGGAGGTTAGGACAATGCAAGAAATTAATATCGTACGTGAGATACAAACACTATTAGATAGTGATTTGACGGCTTATAGGATAGGCAAAGATACAGGTGTAGACAACACGCTCATAAGGCGTTTAAAGAGTGGTGAAAGGCCCGTAGAAAACATTAGTGTTAAGGTAGCACAAAAGCTATTAGACTATCGCTATAAGGTGATTAAAGATGATAGGGTTTGTGATGAGTAGGCATGATGGTTGTGAGATGAGTTGCAAGGATCGTTGAGATACATAGACAAGTAAGCGATTATAGTTAATATGTAAGAGTGCGGTATGTGGTGGCTGTAAAACAGTACGTTGACGCGCTTAAAGAATTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 147916-147400 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIG01000001.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 147915 28 100.0 33 ............................ TCCCAATGGGGCGACTGGTGGGGCGGAAGCCGA 147854 28 100.0 33 ............................ TATCTTTTGCTCGCGTCAAGTTTAGATTGTAAG 147793 28 100.0 33 ............................ TAAAATTACCATTCTCGTCTTCACGTCCACTAT 147732 28 100.0 33 ............................ CAGCGGTTCAATGCGTTCGCAAATCAATTTAGC 147671 28 100.0 33 ............................ TTTCAGCTGATTAACATAATCAATTATCAGCAT 147610 28 100.0 33 ............................ CGCAATCGGGACAACTAAGGCCGTAACTAAGCC 147549 28 100.0 33 ............................ CCAGTTTTTCTCTAACCTTTACGCCCTAGATGG 147488 28 100.0 33 ............................ TCTGTGCCTTTTTCTTAGCCATCTTCAGCACCG 147427 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 33 GTATTCCCCACGCACGTAGGGATGATCC # Left flank : ACGGAAGATGAAATTATGTCAATTGGTGCGGTTAAACGTGATGAAGCAGGCCAACTAACCGAGTTTGATCAACTGATTCAAATTGACCAAGCCATACCGAGTAATATTACCAATTTAACCGGATTAACGGCTGAAAGATTGGCTGATGAAGGGATTGAATTGAGTGATGGTTTACAGAAGTTGCGGGACTTTGTCGGCTCATCGTCAGTGATTGGCTATAATTTGCACTTTGATGAACTATTTTTGGTTAATGGGTTTAAGAAACTTGAACAGCCACAACTGGAAAATAAAATGGTGGATTTAATGCCGCTAGTGAAAAAAGATAATCCATTTCTGGATAATTATCGACTACAAACTGTTTTGGAAGATTATGAAATTGAGGATGAAGATCCGCATCGAGCGTTACCAGATGCTAAAGCAACTTTTGTATTGGCGACTAAACTCATTGAAAACGGGGTTTTGAAAATTTAAGAACCGCGGTATATCAATGATTCTTTAGT # Right flank : CGAATGGTACGAACAATCCGAAACCAGTTTATCAACGCACCATCCTTGGCATTTTGTCATGCAAGATACATCGCATCTGAAAATTGATCCGAACCAGTACGACTTAATTATTACTGGCTATTTCAAAAATACAGAACCTATTTTTTTCTTTAAAAACAAGACCTACAACAATTTATGCGCTATCGTTCGCGACTCGGGCCTTGATATTTATCAATCTGGTCAGAATAAACTATCAGCTTCCGACCGTGAGGTATTCCAAACACTATTCACATTTCTGAAAGATTCAGATACACACACAGTCAAGCTATTCACCATTGACCCTATCGCAAATGCTTAATTAAGCACATAGTAAAAGTCAGCCCTGATGCCAATTAAATCGGTATCAGGGCTGGCTTTTACTTTAATCTGTTTTATATTCTGGCTCGCCGGTAACCGCTAAGTATTGACCTAAAAATGACACGTCCTAGTAGTAAAAAAACATGAGAGTTTTTTTAATCACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55878-55606 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIG01000196.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55877 28 100.0 33 ............................ TTCGTGGGATTCACTGACGAAGTTTGGCCCAAG 55816 28 100.0 33 ............................ TGTTCTCGTTTTTATCAAAGTCACTGTAAACTA 55755 28 100.0 33 ............................ CTCGAATCTCTTTTACAGTGCAACCAGTCACTG 55694 28 100.0 33 ............................ TCGGATGAGTTCGGCGACTGCAGCGGGCGTTGT 55633 27 82.1 0 ............T........-..T.TA | A [55609] ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTATTCCCCACACACGTAGGGATGATCC # Left flank : ATTTCAAATCACGTGGCTGGATAGCTTAGCAAGTATAGTAATCGGGTTCTTTATTTTTGCGGCCGGACTACAGATTTTTAAAGATAGCGGACTACAACTCATTAATTACAGTGATCCACGAGTTGAAAAAGATTACATTAAAACGATTCAACAAATTTCAGGAGTCGATCAGGTAAATGCGATTGATGTTCAGTATTCGGGTAATTTGGTCACACTGTCGTTAGTCATTGGCGTAGCGCCGCAAATGACGGTAGCGGAAAGCTTTCAATTGAATGAAGATATCGAGAGTGTTATGAAGATTCAATATGGCGTGATTGATACGAAGGTCATGTTTGTGCCAGCGATTGGAGTTATGGATTGACTCCAACTACCAGCAGTATGAAACCAGCTTATTATGGAGATTTTATGTTGCGGTCGGATATTGTCTTAGTTTATTGCAAAGTGATGTAAAACGCAGGCTTTGGAAAAATGAAATGCTATTATAGCGGCGTTTGTTTAGT # Right flank : CAATGATGGTGTAAAAAACTAATAGTTGTAGTGTTTAAAAGCTTAGTCTTAATGGGCTAGGCTTTTTTATCGTCATAGATTAATGCTTTTGGGAAAAGAAAGCTTATAATTAATTTGGATTTAACAAATTTTTATTGGAAGTTGGAGCTTTTTATGAATATACAAATGAGTTTTCATCATATTGGTCATCCGGTCGCGTTAGATCAAATTAAGGACAATCCGGAAACAAAATACAGTCCTTTATTTGATATGTATTCATTGGATTAACAAAATTCGTTGGGAATTCCAATTGAATTACACGCGTTTGGCCCTAACAGTTCACTGGACCCTTTAATTCAGCAAACGCCACATGTTGCGTTTAAAACGTCTGACATTGAGGCGGCTTTAAAGAATGCTAAAATCTTAATGCCAAAATATACCCCTTTCAAAGGTTATACTTGTGCAATGATTTTGCTGAATGAGCAACCAGTAGAATTAATTGAAACAACGTTATCGGAACG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACACGTAGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 62589-62255 **** Predicted by CRISPRDetect 2.4 *** >NZ_UYIG01000196.1 Lactiplantibacillus mudanjiangensis isolate Lactobacillus mudanjiangensis AMBF249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62588 29 100.0 32 ............................. CATCTCCATTTTGTTCATTTAACGATAAGAAT 62527 29 100.0 32 ............................. TAAAAGTAATTTTGCTTCTTCCGTAGTCATGT 62466 29 100.0 32 ............................. TGGTTGTTCTTTAGCGCCAGCAACCGAAAAAA 62405 29 96.6 32 ............................C ACGCCAATTATATTGTTTCCGGTCACCAGACT 62344 29 96.6 32 ............................C GTGGCCGCCAGCTACTATCATGCGAGCTATGT 62283 29 75.9 0 ............T.C....T.G.T..TA. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.9 32 GTATTCCCCACGCATGTAGGGATGATCCT # Left flank : TTGACCCGGGACTTGTTCAAAAACGACGCGGTTATCTTGAATTTAGACCATGAAGAAACCACGTTATTGTTGAGCTCCGATTTAAACGATCATGGGGTTGCCATGACCATTGAAGATGCGCCGTACGTGGGCATGTGGTCACCATATCCTAAAGATGCGCCATTTGTTTGCTTGGAACCATGGTGGGGTATTGCGGACAACGTCAATCATGATGGTCAATTGAGCCATAAGATGGGCATTAACAAGTTAGCGCCTAACCAAACGTTTGATGCAAAATATGCAGTGAAGTTCTTCTAAAAATTGATTATTTTGATCAAAGTGCCGACTGATTCTCTGGAATTGGTCGGCTTTTTTGTGATTTAAATTAATTGAGGGGTGAGTGTGGAGAATTTAACGTGGGAGCTTTATACTGAGATTATGGATTTGGTGCTTAAGTGCAAAGTGATGTAAAACCGGGATTTTTGAAAAACGGAACGCTGTTGTGGCGGTGTTTGTTTAGT # Right flank : ATGTTTAATATCATAATATGACGCGACTTTATGGAGTGTGTTTCCTATACAAAGGGCGAAACTTCAATTGTATATTGAAGTTTTGCGCAATTAGAAGATTTATCGATTAGATAAAGTTTGCGCAGCGAATAGATACAGAACTTAAATGAAAATGATTGTTTTTTGACTAGTGCCTTAGTTAGGGGGCCATTATGGATAGTTCAATTCAGTATGCAAAAGAAAACAAAAAGGAATTTTTGGCCCGTGTGATAGATGGAAATAAGCAAGAAAGTAAGAAGACGGCAATATTTATGGCAGGGGCACCTGGATCAGGAAAGACGGAAGTAGTTGATGCCAGTAGACAACTTTTATTAAATCTTTGTGATATAGATGCTGATCTATTTCGTTCCGATTTTCCGGGATATACGGGACAAAATTCTAGTGATTTTCAGAAGGGTGCTGCTTACTTGGTAGATTATACGTTTTCTTGGCTAGTAGCACATCGGTACTCATTAATCTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTAGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //