Array 1 17054-15134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRD01000029.1 Salmonella enterica strain CVM 43786 43786_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17053 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 16992 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 16931 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 16870 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 16809 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16748 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 16687 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16626 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16565 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16504 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16443 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16382 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16321 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16260 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16199 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 16138 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16077 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 16016 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15955 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15894 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15833 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15772 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 15711 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15649 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15588 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15527 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15466 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15405 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15344 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15283 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15222 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15161 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1185-2661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRD01000006.1 Salmonella enterica strain CVM 43786 43786_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1185 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1246 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1308 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1369 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1430 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1491 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1552 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1613 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1674 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1735 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1796 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1857 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1918 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1980 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2083 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2144 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2205 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2266 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2327 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2388 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2449 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2510 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2571 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2632 29 96.6 0 A............................ | A [2658] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //