Array 1 845-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCN010000012.1 Prevotella melaninogenica strain SCHI0027.S.9 Contig_12_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 845 33 97.0 36 ............................C.... TTGTCACAATCTGAGAAAGCATTCACTCCAATTGTC 914 33 100.0 36 ................................. GAACTACAACCTGAGAAAGTATAGCCGCCAATTTCT 983 33 97.0 0 ..........................G...... | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 98.0 36 GTAACACTATTTGGAATGGTTACAGAAGTTAGA # Left flank : GCTGCTGTATAGTAATAAGGTTTTCTATATAAGCCTTCAAAGTTTTCCCTGTAAGTTTCTGTTCTTATTCATCTTTCTTTGTCAGACGAACATACAACAAGCAAGAAAATACGGTGTGACTTAGGAAACCCGATGTGTCTGTTATTTGATGATTATCTTTTTACCATTGACAATATACATACCCTTAGGCAAAGCATTAATTTCGTCAGTGCTTGCTTTACTTAGCCGTTTTGTTCCATCTATTGTATAGACATCAGCAAGTCCTGAGTTATTATAAACAGTGTTTGTAATGCCAGTAGTACTACCCCTCTATTAATAAGAAATCTTCCCATTGAGGTGCTTGTTTATAGGCGTCAAGACTATTTTTAGGAACAATAAGTTTACATTTAGATTTATTAATGCCGTCAAGAGCATTTCTGCGACAGGTTGGTGGTACGACTGCCTCACTTGAGATCTGTGTAATATTGATACAACCTGAGAAAGCACTTTCGCCAATTTTT # Right flank : AGAGCTACAATCGCTGAAAGCACCGCCGCCAATTGTTGTAACACAAGCTAGATTGTCACAATCTGAGAAAGCATTCACTCCAATTGTCGTAACACCATCACCTATTATAATTCGTTCAATATCATATTTATCATATTCGTCCCATAGTTCTCTGTTGTCGTCTGAATAATCATACATTTCCCCTTTTCCTGAAATGGTCAAAACACCATCATTAGTAAGGTACCATCTTAGATCAGGTCCGCAAGTACCAGACTTTTCTGCATTAGCTGATAAGCCCATGAGTAGGGCTATTAATAAGATGTAAATTTGTTTCATATTAGTACTTTTATATAAATAATATTTTTTGATTTATGGAAGTTCAAATGCAAAGATAAATAAAATTTATTATAAAATGTTTTTCTATAAAAAGTTTATGTAGCATTTTGCTTCTTTTTTCAAGATAGTTATTTTTGAGAGATGGTCGTAATATTATGAAAATCAACTTTGCTGTCACTTCTGTC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACACTATTTGGAATGGTTACAGAAGTTAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 143031-142753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCN010000005.1 Prevotella melaninogenica strain SCHI0027.S.9 Contig_5_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 143030 47 100.0 30 ............................................... TAATACTAACTCTCCTACTGACATAGTAGG 142953 47 100.0 30 ............................................... AATGGCGAACTAAACAAATATGGAGATGAG 142876 47 100.0 30 ............................................... TTTGTTGATTGCCAGTATGGTATGTTATTG 142799 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 TTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAACT # Left flank : | # Right flank : TAAAAGTTATATTTACCTGTATTACAGCAAGTAACAAGACTTTTGTACAAACAAAAAATGCAAAACAAAAGAGTCCTATCACAATGATGGGACTCTTTTTTAGAATAATTCTAGTTGCTGTCCTGGGGCATTAGGGGGACAGTAGATATTTAGTGGGGATAGGCATATATTTTGGCAAGCCTAAAAAGAAAGAAACTTTTATCTACAACTCCTCTTAAGTTAGCCCTAAATAGTTTTATTTTTGCATTGAAGGATTCAGCTGCAGCGTTTGTAGATCTGTTAATATAAAAGTTAAGTATGTCTTCGTAATGCTCGTAGAAAGTTGCAGCAATGACATTAAAGGAATGAAAGCCAGCTTCTGCGACATTATTATACCATTTTGCCAATGATAGTCTGGCTGCATCTTTGATAGTATTCTTAGCAAAAATCATTCTTAGCGAATGTGATAAACCGTAAGCCTTCTTAATGTCAGGATATTCTCTGAACAGTATTTTGGCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 2835-713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCN010000078.1 Prevotella melaninogenica strain SCHI0027.S.9 Contig_78_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 2834 47 100.0 30 ............................................... TCGTAATCTTTCATACCATCACAAGCAAGT 2757 47 100.0 30 ............................................... TCCTAAGAAATATAAGAGTACTATTTTTGA 2680 47 100.0 29 ............................................... TTCTTATCTCGTGGCAAATAGGCGTCTAA 2604 47 100.0 30 ............................................... CTAAACGCTCAACTCGTGATAGCTTCCTCG 2527 47 100.0 29 ............................................... ATTAGCAGAAACGAAGTCGGTTTCATAGG 2451 47 100.0 30 ............................................... CAAGCATAACGACAGTAAGGCGCAAGGTGT 2374 47 100.0 31 ............................................... TTGTGTGCGCTTGCGCTGCTTCTCGTACCCC 2296 47 100.0 30 ............................................... TGTTAGCAGAAACGAAATCAGTTTCGTAAG 2219 47 100.0 29 ............................................... CGTAGGTTCATATTAGCAGTTAGTTCACC 2143 47 100.0 30 ............................................... TAGTTTTCAACCTTGTATGCTTGAGTTCCT 2066 47 100.0 30 ............................................... TCAAAGCGTTAAAACAGGTCAAAAAGAGTA 1989 47 100.0 30 ............................................... TGTAAGATAAGGCAAGTGCGGACGCCCTAT 1912 47 100.0 30 ............................................... GAAGTTGTGCAGAGGTAACAAGACCATTAG 1835 47 100.0 30 ............................................... GTAAGATAAGGCAAGTACGGACGCCCTATA 1758 47 100.0 30 ............................................... AGATGAAGATTTGAGCAAAACATCACCCAA 1681 47 100.0 30 ............................................... CTAAACGCGTATGGGGGCAAAGCCCCCTAT 1604 47 100.0 30 ............................................... TTCCATGAAGTTGTAAAGTATGGTATTCTT 1527 47 100.0 30 ............................................... AAGTGTTAACATATTGACCAGAAACCAGAG 1450 47 100.0 30 ............................................... CAATGATGAAATCATCAGAAGGGCGAGTTT 1373 47 100.0 30 ............................................... TCAAAGCGTGAAGACAGGTAATAAAGAATA 1296 47 100.0 30 ............................................... TTTTGTAAATTTTTTAGTAAGAGGATTAAA 1219 47 100.0 29 ............................................... CCGCTGTTACGTTGTCTAATGGATGTGTC 1143 47 100.0 30 ............................................... TAGGCTCATTCAAAACGTCTTTGCGGTAAA 1066 47 100.0 29 ............................................... TTAATCTGTGCCGTCTGTGCTTCGCCCCA 990 47 100.0 30 ............................................... TTAATACTAACTCTCCTACTGACATAGTAG 913 47 100.0 30 ............................................... TAATGGCGAACTAAACAAATATGGAGATGA 836 47 100.0 30 ............................................... TTTTGTTGATTGCCAGTATGGTATGTTATT 759 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 28 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAAC # Left flank : AGCGTATCAACCACTGACTTTTGAAAATGGAGATACACGTAGTGAACTGCTGGTAAGAAGTAGGTACCTGTTGTTCAAATCATCAGAGAAATGGACTAATGAACAGAAGCTAAGAGCCAAAATACTGTTCAGAGAATATCCTGACATTAAGAAGGCTTACGGTTTATCACATTCGCTAAGAATGATTTTTGCTAAGAATACTATCAAAGATGCAGCCAGACTATCATTGGCAAAATGGTATAATAACGTCGCAGAAGCTGGCTTTCATTCCTTTAATGTCATTGCTGCGACTTTCTACGAGCATTACGAAGACATTCTTAACTTTTATATTAACAGATCTACAAACGCTGCTGCCGAATCCTTCAATGCAAAAATAAAACTATTTAGGGCTAACTTAAGAGGAGTTCTAGATAAAAGTTTCTTTCTTTTTAGACTTGCCAAACTATATGCCTTTCCCCACTAAATATCGACTGCCCCTTAAGAGGGTCAAGTGAGTAACC # Right flank : TTAAAAGTTATATTTACCTGTATTACAGCAAGTAACAAGACTTTTGTACAAACAAAAAATGCAAAACAAAAGAGTCCTATCACAATGATGGGACTCTTTTTTAGAATAATTCTAGTTGCTGTCCTGGGGCATTAGGGGGACAGTAGATATTTAGTGGGGATAGGCATATATTTTGGCAAGCCTAAAAAGAAAGAAACTTTTATCTACAACTCCTCTTAAGTTAGCCCTAAATAGTTTTATTTTTGCATTGAAGGATTCAGCTGCAGCGTTTGTAGATCTGTTAATATAAAAGTTAAGTATGTCTTCGTAATGCTCGTAGAAAGTTGCAGCAATGACATTAAAGGAATGAAAGCCAGCTTCTGCGACATTATTATACCATTTTGCCAATGATAGTCTGGCTGCATCTTTGATAGTATTCTTAGCAAAAATCATTCTTAGCGAATGTGATAAACCGTAAGCCTTCTTAATGTCAGGATATTCTCTGAACAGTATTTTGGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCATTAGCACGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //