Array 1 2414489-2416791 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP013045.1 Tannerella forsythia KS16 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2414489 30 100.0 37 .............................. GAAACTGTATTAACTGGTAGTACTGTCTTTAATATGT 2414556 30 100.0 35 .............................. TATAATAATGATTATAAACATTCATTTCCATAAAA 2414621 30 100.0 36 .............................. ACTTTTACAGTGTTAACTTTCATAATTCTCACATAC 2414687 30 100.0 35 .............................. TTATCAAATGGCTTTATTAAGTGATTGGTTAGATT 2414752 30 100.0 37 .............................. TTATTATAAGGAGCTAATAATTTAATAAAAGATGAAT 2414819 30 100.0 38 .............................. ACCTTTAATATGAGTTCTTTCTGATACTACTATAAGAG 2414887 30 100.0 36 .............................. CGAGAAGACCTACAATCTCTCTGTAAGAAGTACTAA 2414953 30 100.0 37 .............................. TTAGTAGGATTGACAGATGTTTGAACTATCAAGTCCT 2415020 30 100.0 38 .............................. ATCCGTGGATCGTACATGTAGAAGAAAAACAATAGTGA 2415088 30 100.0 36 .............................. TTTCCCGTAATCGGCGTTCATGTCCTCACGGGATAT 2415154 30 100.0 36 .............................. GTTCGGGTTCTCCTGCATCGCCGCCCGCGCAGTTAT 2415220 30 100.0 38 .............................. TCGTCAAGTACGAATGCGAACACTTTTGCGGGATTAAG 2415288 30 100.0 38 .............................. ACGGCTTGACGGGCAACAACTAAAAAAACATGCACGGG 2415356 30 100.0 34 .............................. TTCTCACCTTTGCGACTACAACACCTATAAGTGT 2415420 30 100.0 38 .............................. TATTAAGAATTATTAACAACAATATTCTGTATAATCTA 2415488 30 100.0 38 .............................. CGCGGCAGGCGGCGCGAGCCAAACCGCCCGTGCAGGGT 2415556 30 100.0 37 .............................. GAGTTATGGCGACCTCCTCGCCCGTGTCGGGGGTAGT 2415623 30 100.0 37 .............................. GTCCCGCTTGCAGTACGGGCAGTGAAAGTTACACGAC 2415690 30 100.0 36 .............................. AATATGCCATTTACGGATGTATACGGGCATAAAAAC 2415756 30 100.0 37 .............................. ACGACGTCACGCAGCCCGCCCATCACGCCAGCCACAG 2415823 30 100.0 38 .............................. CACCTTCTACGGGGTTGTATCCCCGTACCGTCCAGAAC 2415891 30 100.0 36 .............................. CGCACGAACGGCAAACTCCGCGCCCGACGAGGCCTT 2415957 30 100.0 36 .............................. AAGAAAAATGAGCGAAAATTATTTTAGAGAGGAGTT 2416023 30 100.0 38 .............................. CTATCTAACGAAGGGATTAGCTGGGAAAAATATAAGGC 2416091 30 100.0 39 .............................. TGCAGACACGAACGACTATTTCGCAGAGCCCACGATCTT 2416160 30 100.0 38 .............................. CTATCTAACGAAGGGATTAGCTGGGAAAAATATAAGGC 2416228 30 100.0 36 .............................. ACGTGAATACCTGCACCGCCCACGCGGGCAGCAAGG 2416294 30 100.0 35 .............................. AAAAACGTGCGGAAATTAGGTCAATATTCGCTCTC 2416359 30 100.0 37 .............................. GATTTTTAGTTTCGGGAAACACTCGGCTACGATGCCT 2416426 30 100.0 38 .............................. TTGTGAGGGATAAGTTTCATAGCATCATCCCCCTTCTC 2416494 30 100.0 37 .............................. TCTTCAATAACTCGCCGAGTACAACGTCGAAATCGTA 2416561 30 100.0 34 .............................. CTCTCTCTTCGGGTAAGTCAATCACATGCCCGAA 2416625 30 100.0 40 .............................. ACCCAAGCGAAAATGATATTCAGGAAGTTTTGAAGGGCTA 2416695 30 100.0 37 .............................. GCTTCTTCGATTCTTCTTTTACCTCTCCGGTTTCCGT 2416762 30 93.3 0 .........T...................T | ========== ====== ====== ====== ============================== ======================================== ================== 35 30 99.8 37 CTTTTAATCGGACTATCATAGAATTGAAAC # Left flank : TAAACCGTTTAAAATGTACTGGTAATGTATGTGATTCTGGTCTATGACTGCGGCGAGAAACGGGTTGGGAAAATGCTCAAGCTCTGTCGGAAATATCTGAATTGGATACAAAATTCGGTTTTTGAAGGCGAAATTACAGAAGTTAAATTAAAAGAGTTAACTTTGAAGGCTGAGAAAATAATGAACAGCGATGAAGACTCTCTGATTGTTTTTTCAAGTCGACAAGAAAAATGGTTGGATAAGCAAATCTTTGGTAAAGAGCGGAGTAGTATCGATAACTTCTTGTAATAAGTTGTCGGTGAGTATGAATTTCCATAATAGAAATCGAGGCATCGCTATTATGCGTTCTTTGACACATTGAAAATCAAAAGATAAAATTAGTTGTCGAAGTGCGGGGTTTTTCTTACCTTTGTGCTTCGACAACTTTGTTTGTTAATTTGTTGATATAATTGAAGGATAGATTATTGAGAATCAGTAATGTTTTTTGTCGTTTCGAACGG # Right flank : TTGTCGTTTCAACTACTGAATGCAACTTTATGTTTCAAATTTAAGAAAAAGATTTCTTTTGGAGAATAGAAATTGAGTTTGTATTTTGGTCTTTCGTTGATTCTGTATTGTATCTGTTTGGTTATATTGTTACTAAATTCATTGCAATTTGATTTTTTAGGGATGTACTGCCTGATCAGTTTGTTTGTATTCTCAATCAATCCTTTTTCCCATGAAGAATAGGGATGAGTGAAATATATCTGTGTATGTAACTTCTTGGCTAATGATTAATGATCTGCAAACTCGCTACCATTATTTACGGTGATGGAGTGTATATGCTCTTTTTGTATGGCAGCAGTATATCGTAAACGATTTTTGAATGCTCTTTTGCATTTTTCCCTTTGGGCAGTTTTTGCATCATGCAAAAAAAACATAGTTCTTTCCACTAAGGTCAGGATATCCCCTTTGCCGTTTTTTCCGACAATAGTGTCCATCTCCCAATTTCCAAAGCGTTGTTTGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATCGGACTATCATAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 3117004-3115419 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP013045.1 Tannerella forsythia KS16 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 3117003 47 100.0 30 ............................................... TGTTATTGGATCATTAGTTGAGCTATCGGA 3116926 47 100.0 30 ............................................... AATTGTAGCAAGCGGTAGCGCGAAGGGTTG 3116849 47 100.0 29 ............................................... AAACGATGATAGTGTTGTCGACACATCTT 3116773 47 100.0 30 ............................................... TGATTATTGTCAACAATCTCCATGGAACAA 3116696 47 100.0 30 ............................................... AAGTACAGAGTCTTTAATCGAAGCTGGAAG 3116619 47 100.0 30 ............................................... CGATTTGGATTCCTTTAAAAATATAAACGA 3116542 47 100.0 30 ............................................... AAAAATTAGAAATGCTAAAAACGACGAGTA 3116465 47 100.0 30 ............................................... GCCGTGTGTATCGCCTCGTGTCGAATCGAC 3116388 47 100.0 30 ............................................... CGTCGGTTGGAATACTATTTTATCCTCCGA 3116311 47 100.0 30 ............................................... GAAGTAGACATCACAGAACTGTTCAGGGCT 3116234 47 100.0 30 ............................................... ATAAATTCGCGACCCTCGTAGCTATCTTTC 3116157 47 100.0 30 ............................................... GCTTTTGTTGCTATACTATTTTTTGTGGAT 3116080 47 100.0 30 ............................................... ACGGTGGGCAACAATCCAAATCCTATCCCT 3116003 47 100.0 30 ............................................... GCTTATGCACAGCGGCGGGATGAATCCTTT 3115926 47 100.0 29 ............................................... TCGACCTTTTCGTCGATAACCATTTGCGC 3115850 47 100.0 30 ............................................... CTACGTTAAGTCGAGGAGTTCCTGAAAACA 3115773 47 100.0 30 ............................................... TATTTGTTTTTCATTGCAAAGAAAAACATT 3115696 47 100.0 31 ............................................... TTTGCGCCCAGCGTTTTTGCGCTTTCCGCCG 3115618 47 100.0 30 ............................................... CCCCGTATACATCCGTGTGTTTCATAACAA 3115541 47 100.0 29 ............................................... TAATAAAACACGACTGAACAGTTTAGTTT 3115465 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 21 47 100.0 30 GCTGTTGTTGATACTACAAAGGTAGTAGTTTTCAAGCAAATCACAAC # Left flank : AACTCTGTTTTTTTTTTAGGCGGTTCGCACAAGGCCTGTCTTATTTCCTGTGTTTGTTGCACGTTTAATTCCGGGCGGAGGCCGCTTCTTGGCTTGGTGCACAGCGAGTTTAAATCTCTTGTCTCATCTACCTTTTTGATCCAATTTGATATGGTTCTCGGAGGATTCCCAAACATCAAACTGATACTGTCACAAGAGCTTTCTTCATCTATTAAAATAATAGCACACCGTGAAGGCGATGAATAAAATCCGCTTCTTCGTTATTTTTAAAATAAGACAGAATTGCTGATTCTATCTTGTCCGCATTTTGAATGACTAATTTTTGCATTGTTTTTTTGTTTACAAAGATACAAACTCAATATGATCAATTAATTTGTGCGTTTATTATAGAAAACGAAAATCCCACCCTTGATGAGTGGGATTTTCGCTTTGTAGTATCATTTTTTATTTTTTATAATATCTATATATGGTTTTGATGTTCAATATTATATAGATATTAA # Right flank : GCGTATCGGCATTGTTAAATTAGTGTTTTGTAAATTTTGACATGACGTATATTATTTGTATCTTTGTCTCAAAAAGTCATGATACGATACACCATTAAATTAAGCAAGCAAGAAGTGGAAGAATTGGAAGCGATAGTCAACAAAGGCTCTCACAAGTCGCAAACCTATCGTGCGGCCTACATCCTGCTCAATACCGATGAAGGCGATTATTCCCGGAAGGTGACAAACGAGCGTATATGTGAGGTTTTACGCATAGGCATGCGCACCATCGACCGGGTGAAGAAACGATTTGTGGAAGAGGGTTTTGAAGCCACGTTGGAGCGTCGCCCAACCCAACGCGTATACGAAAGGAAAGTCGATGGCGATGTGGAAGCCAAATTGGTGGCTTTATGTTGCAGCGCTCCCCCCGAAGGGTATGCGAGATGGTCTTTGCGCTTGCTGGCAGACAAGATGGTTGAATTGGAGTATATTGACAAGATTTCCCATGTGACGGTAGGGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTGTTGATACTACAAAGGTAGTAGTTTTCAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //