Array 1 19742-19577 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQM01000029.1 Streptococcus phocae strain ATCC 51973 contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19741 36 94.4 30 ..................................AC ATGGTAGTTTTTAAAGATGCAAGCTATGTA 19675 36 100.0 27 .................................... TTTATTTAAATAAATTGAAAAGGAGGG 19612 35 86.1 0 .............T..A......-......A...C. | C [19595] ========== ====== ====== ====== ==================================== ============================== ================== 3 36 93.5 29 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAATT # Left flank : TTTGAATGGTTCCAAAACGCCATTAATGACTTATTTAGATTCGGC # Right flank : GAGGGTTTCACCCTCTTTTTTATATGTTTTAACAGTTTTATTTCCGTAAGAACGAAGATGTTATTATGTGTTGGATAGCTTGGTGTCCGTTGTCATCTTTATATTTCTATTCCTTAGTTCTCGTGTTATAATAGTAGGTACGTTGGAGGTGACAAATGGAACAGACATTTTTTATGATAAAACCTGATGGGGTTAAACGTGGATTGATTGGTGAAGTGTTGCAACGTATTGAACGTCGTGGTTTTACGTTTGATAAGTTAGAATTGCGCCAAGCGAGTCCAGACTTATTGGCTCGTCATTATGAATCCTTGGTCAATGAATCGTTTTACCCTCAGCTAGAATCTTATATGACGAGTGGTCCAGTTCTTGTGGGCATTCTCTCAGGAAATAAAGTAGTGTCGTCTTGGCGTATGATGATGGGTCAGACGCATCCTCAGGATGCTGCTCCAGGGACAATTCGTGGAGATTTTGCACAAGCACCTGATGAAAAAAGCAGTATT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.71%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 4400-3636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHQM01000061.1 Streptococcus phocae strain ATCC 51973 contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4399 36 100.0 30 .................................... CAGGTGAACCACCCATTAAAACATCGTTGT 4333 36 100.0 30 .................................... AGGATATAGAAGAAATGAGTAAACATTATA 4267 36 100.0 30 .................................... TTGAAAAACTTGAAATGCTTGACAGAATTA 4201 36 100.0 30 .................................... CAAAAATGAGCAGAATAAATTATAGTAACA 4135 36 100.0 31 .................................... TAGCTATTGAGAATAACTTCCATCACCTTAA 4068 36 100.0 30 .................................... ATTAACGTTGTTTTCTACATGGACTTAATC 4002 36 100.0 31 .................................... CAGAGGTGTAGTGAGATTGCCAGACTCTTAC 3935 36 100.0 30 .................................... TTAACAGGAGAAGATGTCAACAAAGCGCAA 3869 36 100.0 30 .................................... CCCTTTGAGCCTATCCTTTACGCAGTAACC 3803 36 100.0 30 .................................... ACACAGAACAAATGACTCCACAAGAAGTAG 3737 36 97.2 30 ................T................... CCTCGAGCACAGATAAAGAGCTATTAAAAG 3671 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 99.8 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Left flank : TTGAATGGTTCCAAAACAGTTCTTGAGAAATTTAACACAGCAGGTA # Right flank : GACAATTGTCTTTTATCTCGAAAATGTAATTTTTTGATAATAAGACTTGCCAAAAGTCATCTAATATTATATACTATAACTGTTGGAACCATTCAAAACAACACAGCGCGTTAAAATAAGGCTGGTCCGTAAATAGCTTGAAGAAAGTGGCACCGATTCGGTGCTTTTTTTGTACCCAAAAACAAGCCCTCTTAGGGACTTGTTTTTTTTTTAGGATTCATCCTTCTATGGTTTTTGTTGGGATAATAACACTAATCCCCAAATAATACTTTCGTAAATGATGAAAAATAGGACAAAGCAGTGCATGAAAAAGGTTTCTGGTAAAATCCAAATCACAGGATCTGTTAACGGATTAAATAACCAAGTCGAGTCACCGACAAATAAAATCTGGTGGAATAATGTAAAAAAATTATCAAACCCAATCATAATGGCAAATAACGCCACAAGCACTGGAAAAAAGCCTGCAAGCATCAAGGGGTATCTAATGAGAATGAGAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //